Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1117 109 1e-18 seq652 109 1e-18 >seq1117 Length=604131 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||| || || ||||| ||||| | ||||| Sbjct 393875 AAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTC 393816 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||||||||| ||||| || || || Sbjct 393815 CTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTC 393756 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || || || || || || || | | || | ||| ||||| ||||| || || Sbjct 393755 CTGGATTTTGGCCTTGACGTTCTCAATTGAGTCAGAACCTTCGACCTCAAGTGTGATGGT 393696 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || ||||| || || || || |||||||| Sbjct 393695 CTTGCCCGTAAGAGTCTTGACGAAGATCTGCAT 393663 >seq652 Length=32697 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || || || ||||| || || ||||| || || | || || Sbjct 7101 AGAACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCGTTGAGGGTGCGGCCATCC 7042 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||||||||| || | ||| ||||| || || || || || || || Sbjct 7041 TCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCT 6982 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | | |||| ||| || || | ||||| ||| Sbjct 6981 TGAATCTTGGCCTTAACGTTCTCGATCGAATCGGACCCTTCGACTTCCAAAGTAATCGTC 6922 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || |||||||| || || ||||| ||||||||| Sbjct 6921 TTTCCAGTAAGGGTCTTCACAAAGATCTGCATT 6889 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| ||||| | ||||| Sbjct 6646 AAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTC 6587 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||||||||| || || || || || Sbjct 6586 CTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 6527 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || || || || | | || | ||| ||||| || || || || Sbjct 6526 CTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGT 6467 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || ||||| || || ||||| |||||||| || Sbjct 6466 CTTGCCCGTAAGAGTCTTGACAAAGATCTGCATCTT 6431 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||| | || || ||||| ||||| || || |||||| ||||| | || || Sbjct 11301 AAGAACGAGACGGAAGGTCGATTCCTTCTGGATGTTGTAGTCATTGAGAGTCCGGCCATC 11242 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || | ||||||||||| || || | ||| || || ||||| || || | ||| || Sbjct 11241 CTCGAGCTACTTTCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTTTTTGTC 11182 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||| || || || || || | | || | ||||||||| || || || || Sbjct 11181 CTGGGTCTTGGCCTTGACGTTCTCAATCGAGTCAGCATTTTCTACCTCAAGGGTGATGGT 11122 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || || || || ||||| |||||||| || Sbjct 11121 CTTTCCCGTGAGGGTCTTCACAAAGATCTGCATCTT 11086 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| ||||| | ||||| || || || || ||| Sbjct 6858 GTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCA 6799 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||||||||| || || || || ||||| ||||| || || Sbjct 6798 GCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6739 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | | || | ||| ||||| || || || ||||| || ||||| || Sbjct 6738 ACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTC 6679 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 6678 TTGACAAAGATCTGCAT 6662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151375356919896