Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq31 140 9e-29 >seq31 Length=5916 Score = 140 bits (154), Expect = 9e-29 Identities = 352/532 (66%), Gaps = 25/532 (5%) Strand=Plus/Plus Query 40337 AAGTGCCTGCAACTCGCCAACGGCGCAATCTAT---ACCGACGAC-ACGGCGACC----- 40387 || |||||||| |||||| ||| || | ||| |||| ||| ||||||| | Sbjct 4082 AAATGCCTGCAGATCGCCAGCGGGGCGGTGTATGTGACCGGCGAAGACGGCGAGCGGTCT 4141 Query 40388 ACC---TGGGCCGATGTCCACGATGTCAAGCTACAGGCCCTTGAATCCATCGTCGCCGAG 40444 ||| ||||| | || ||||| | ||||| | ||||| || || || ||| |||| Sbjct 4142 ACCGAGTGGGCGAAGGTGCACGACGCGAAGCTGGACGCCCTGGAGTCGATTATCGACGAG 4201 Query 40445 GCGGCCGGTATGCCGGTGCTGGTGGCGTACCACTTCAAGTCCGACCTCGCGCGCCTACAG 40504 | |||| ||| || ||||||| || || | |||| |||||| |||||| | | Sbjct 4202 TTGTCCGGCGCCCCGCTGTTGGTGGCCTATCAGTACAAGCACGACCTGGCGCGCATCTTG 4261 Query 40505 CGTGCCTTCCCCCAGGGCCGCGCGCTCGACCAGAACCCGCAGACGAT--CCGCGA----- 40557 ||||| |||| | | | || | || | || | || | |||| | Sbjct 4262 AAACGGTTCCCGCAGGCGCAGGAGTTCAAAAAGGGC--GCTGCCGGTAACCGCCAGGTTG 4319 Query 40558 ----CTGGAACGCAGGAAAAATCCCGCTGCTGTTCGCCCACCCGGCCAGCGCCGGCCACG 40613 ||||||| ||| | ||| | ||| || |||||||| ||| ||||||| Sbjct 4320 AGCGCTGGAACAAAGGTCAGATCGAAATCTTGTGCGTTCACCCGGCGTCCGCGGGCCACG 4379 Query 40614 GGCTGAACCTGCAAGACGGCGGCAACATCCTGGCTTTCTTCGGCCACTGGTGGGACTTGG 40673 | || ||| |||| || ||||| || |||||| || ||| || || ||| |||| | Sbjct 4380 GCCTCAACATGCAGGATGGCGGGCACCACCTGGCATTTTTCAGCGACACATGGAACTTTG 4439 Query 40674 AACAGTACCAGCAAATCATCGAACGTATCGGCCCGACGCGCCAGGCGCAGGCCGGCCATG 40733 | || ||| ||| ||| | || |||||||| ||| ||||||| ||||||||| || Sbjct 4440 AGCACTACGCGCAGATCGTGGAGCGTATCGGTCCGGTGCGCCAGATGCAGGCCGGTCACC 4499 Query 40734 ACCGCCCGGTGTTCATCTACCACATTGTCGCCACCGACACGATGGACGAATTGGTCATGG 40793 |||||||||||||| |||| || |||| | |||| |||||||| || | | Sbjct 4500 CGCGCCCGGTGTTCATTTACCTGATCCAGGCCAAGGGCACGCTGGACGAAGTGCTGGCCG 4559 Query 40794 CTCGCCGCGAGTCCAAGCGCGAGGTGCAAGACCTGCTACTGGAAGCCATGAA 40845 | ||||||||| |||||| || || || ||||| |||| |||||| Sbjct 4560 CCCGCCGCGAGGATAAGCGCAGCGTACAGGATCTGCTGATGGACTACATGAA 4611 Score = 89.7 bits (98), Expect = 1e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 36776 AAGGCCAAGGACAAGGCCGGCAAGCAGCTAATCATGCTGTTCTGCAAACCGCGTCCAGCC 36835 || |||||||||||||| |||||| ||| |||| | ||||| || || || Sbjct 544 AACGCCAAGGACAAGGCGGGCAAGGCGCTGATCAACCGCTTCTGTAAGCCTACGCCTAAG 603 Query 36836 ACCAGCAAGCTGCGCCGCGCCACGCGCGAAACGCACCCCGCCGAGTGGGCCAAATTCGTG 36895 | |||| |||||||| |||| || |||||||||| |||||||||||||||| | Sbjct 604 TCGTACAAGGTGCGCCGCTACACGGCCGCTACGCACCCCGACGAGTGGGCCAAATTCATC 663 Query 36896 GAGTATGCCGGCCTCGACATCGAAGCCATGCGCG 36929 |||| ||| || ||||||| ||||||||| Sbjct 664 AAGTACGCCCGCAGCGACATCCTGTCCATGCGCG 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135853480041020