Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq31 143 7e-30 >seq31 Length=5916 Score = 143 bits (158), Expect = 7e-30 Identities = 189/262 (72%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 26129 TTCATGGCGTCGAGCAGGATGTCCTGCACGGCGCGCTTCGTTTCGCGGCGCTCGACGACG 26188 |||||| ||| | ||| | ||||| ||| |||||| |||||||| || | | Sbjct 4611 TTCATGTAGTCCATCAGCAGATCCTGTACGCTGCGCTTATCCTCGCGGCGGGCGGCCAGC 4552 Query 26189 TCCTCGTCGATCGTGTCGCGCGCGATGATCGGGTAGATGAAAACGGGGCGGCGGTGGCCG 26248 | ||||| | |||| | || |||| |||| ||||| || ||||| |||| ||| Sbjct 4551 ACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGGCGCGGGTGACCG 4492 Query 26249 GCCTGCAGCTGGCGCACGGGTCCGATCCGCTCGACGATCTGCAGGTATTCCTCGAGGTTC 26308 ||||||| ||||||||| || ||||| ||||| ||||||||| ||| | ||| | |||| Sbjct 4491 GCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAGTGCTCAAAGTTC 4432 Query 26309 CACCAGTGGCCGAAGACCGCAAGGATGTTGCCGCCGTCCTGCAGGTTCAGGCCGTGGCCG 26368 || || || ||| | || ||| || ||||| ||||||| ||| ||||||||||| Sbjct 4431 CATGTGTCGCTGAAAAATGCCAGGTGGTGCCCGCCATCCTGCATGTTGAGGCCGTGGCCC 4372 Query 26369 GCGCTGGCCGGGTGCGCGAACA 26390 ||| |||||||| || ||| Sbjct 4371 GCGGACGCCGGGTGAACGCACA 4350 Score = 80.6 bits (88), Expect = 7e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 26901 GCACCGACTGGAACCAGCGTTCCTCAAATGCCGAGAAGCTGCGCCCGAGTCGCTGGCCGC 26960 ||||||| ||||||||| || || || | | | || ||||| |||| |||| Sbjct 3824 GCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTGTAAGAGCTGCCGAGACGCTCGCCGG 3765 Query 26961 CGTCGACGAACCACTGCTGGCCCCACAGATCCTGCAGGCCGTTCGGCGACGGTGTGCCGG 27020 | ||||||||||| | ||| ||||||||||| | ||||||||||| || || || |||| Sbjct 3764 CATCGACGAACCAGTTCTGACCCCACAGATCTTTGAGGCCGTTCGGTGATGGCGTACCGG 3705 Query 27021 TGAGGTT 27027 | || || Sbjct 3704 TCAGATT 3698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135603884670788