Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1419 129 5e-25 seq652 109 5e-19 seq1526 104 2e-17 seq1117 98.7 9e-16 >seq1419 Length=601844 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || ||||| | |||| | ||| ||| Sbjct 538640 ACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 538581 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| ||||||| |||| ||||| ||||| ||||| || || || || | Sbjct 538580 AACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGG 538521 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| ||||||| ||||| |||| ||||| || ||| Sbjct 538520 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTT 538461 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||| ||||||||||||| Sbjct 538460 CCTGTCAGAGTCTTCACGAAGATCTGCATGC 538430 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || || ||||| | ||| || ||||| | || | ||||| Sbjct 538412 ACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCG 538353 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || || | ||||| | | ||||| || |||||||| ||||| ||||| | Sbjct 538352 AGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGG 538293 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| ||||||| ||||| || | || || || ||| Sbjct 538292 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTCTTT 538233 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||| ||||||||||||| Sbjct 538232 CCTGTCAGAGTCTTCACGAAGATCTGCATGC 538202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | ||||| || |||||||| ||||| ||||| | || || Sbjct 538802 TTACCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTG 538743 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| ||| ||||||| || || |||| || || || ||||| || Sbjct 538742 GCCTTCACGTTCTCGATGGTGTCAGATCCCTCAACCTCAAGAGTAATCGTCTTTCCGGTC 538683 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| ||||||||||||| Sbjct 538682 AGAGTCTTCACGAAGATCTGCATGC 538658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | || | || || ||||| || || Sbjct 539131 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTGCCA 539072 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||||| ||||| || ||||| ||||| | || || || || Sbjct 539071 GCGAAGATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTC 539012 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||||| ||||| || | ||||| || ||||| || ||||| Sbjct 539011 ACGTTCTCAATGGTGTCAGATCCCTCGACCTCCAGGGTGATCGTCTTTCCGGTCAGAGTC 538952 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 538951 TTCACGAAGATCTGCATGC 538933 >seq652 Length=32697 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||||||| || ||||| || | ||| || ||| | | ||| | |||||| ||||| Sbjct 7092 TGCAAAGTTGACTCCTTCTGGATGTTGTAGTCGTTGAGGGTGCGGCCATCCTCAAGCTGC 7033 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || |||| || | || ||||||||||| ||||| || || ||||| | ||| || Sbjct 7032 TTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTTG 6973 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| ||| | || | ||||| || | || || || ||||||||| Sbjct 6972 GCCTTAACGTTCTCGATCGAATCGGACCCTTCGACTTCCAAAGTAATCGTCTTTCCAGTA 6913 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || ||||||||||||||||| Sbjct 6912 AGGGTCTTCACAAAGATCTGCAT 6890 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| || | || || ||||| || | ||| || ||| | | ||| | Sbjct 6876 CGCAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCG 6817 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | |||||||| ||||| || || || ||| Sbjct 6816 TCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTG 6757 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | | ||||| ||||| |||| |||||| Sbjct 6756 TCCTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATG 6697 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || |||||||| || |||||||||||||||| Sbjct 6696 GTCTTGCCCGTAAGAGTCTTGACAAAGATCTGCATGC 6660 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 94808 AAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTT 94867 || || |||||||| || | ||| || || | | ||| | |||||| |||| ||| Sbjct 11288 AAGGTCGATTCCTTCTGGATGTTGTAGTCATTGAGAGTCCGGCCATCCTCGAGCTACTTT 11229 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || ||||||| | | ||||| || ||||| || || | |||||| | | || ||| Sbjct 11228 CCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTTTTTGTCCTGGGTCTTGGCC 11169 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| | | | |||||| | || || |||| |||||||| ||||| || || Sbjct 11168 TTGACGTTCTCAATCGAGTCAGCATTTTCTACCTCAAGGGTGATGGTCTTTCCCGTGAGG 11109 Query 94988 GTTTTCACAAAGATCTGCATGCTTACAA 95015 || ||||||||||||||||| || ||| Sbjct 11108 GTCTTCACAAAGATCTGCATCTTTGCAA 11081 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| | | ||| | ||||| ||||| || || Sbjct 6630 GTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCA 6571 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||||| ||||| || || || ||||| | || || |||||| Sbjct 6570 GCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6511 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | | ||||| ||||| |||| |||||||| || || |||||||| Sbjct 6510 ACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTC 6451 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 6450 TTGACAAAGATCTGCAT 6434 >seq1526 Length=386723 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || ||||| | ||| | ||||| ||||| || || Sbjct 246113 GTGGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCCTCAAGCTGCTTGCCA 246172 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || ||||| || ||||| ||||| | || || |||||| Sbjct 246173 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 246232 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | ||||| || | |||||||| ||||| || ||||| Sbjct 246233 ACGTTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTCTTTCCGGTCAGAGTC 246292 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 246293 TTCACGAAGATCTGCAT 246309 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | ||||| || ||||| || ||||| ||||| | ||| || Sbjct 247468 TTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGAATCTTG 247527 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| ||| ||||| | ||||| || | ||||| || ||||| || Sbjct 247528 GCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTC 247587 Query 94985 AGAGTTTTCACAAAGATCTGCATG 95008 ||||||||||| ||||| |||||| Sbjct 247588 AGAGTTTTCACGAAGATTTGCATG 247611 >seq1117 Length=604131 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| | | ||| | ||||| ||||| || || Sbjct 393859 GTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCA 393800 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||||| ||||| || || || ||||| | ||||| |||||| Sbjct 393799 GCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTG 393740 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | | ||||| ||||| |||| |||||||| || || |||||||| Sbjct 393739 ACGTTCTCAATTGAGTCAGAACCTTCGACCTCAAGTGTGATGGTCTTGCCCGTAAGAGTC 393680 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 393679 TTGACGAAGATCTGCATGC 393661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282447114320