Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1163 190 3e-44 seq1461 168 1e-37 seq1490 163 4e-36 seq880 154 2e-33 seq1504 152 8e-33 seq1419 143 4e-30 seq1150 134 2e-27 seq1016 134 2e-27 seq1534 125 1e-24 seq581 116 6e-22 >seq1163 Length=299566 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| ||||| || |||||||| |||||||| ||||| || || Sbjct 235004 CGCTAAGCGCCATCGCAAGGTGCTTCGCGACAACATCCAGGGAATCACGAAGCCGGCCAT 235063 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || |||||||||||||||||||| |||| ||| | |||| ||||||| Sbjct 235064 CCGCCGCCTCGCCCGTCGTGGTGGAGTCAAGCGCATCTCCGGACTCATCTACGAAGAGAC 235123 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| || || |||| ||| ||| || ||| || Sbjct 235124 CCGCGGAGTTCTCAAGGTCTTCCTTGAGGGAGTCATCCGTGACGCTGTCACCTACTGTGA 235183 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || |||||||||||||| Sbjct 235184 GCACGCCAAGCGAAAGACGGTCACCGCCATGGACGTCGTCTACGCTTTGAAACGTCAAGG 235243 Query 16672 CCG 16674 ||| Sbjct 235244 CCG 235246 >seq1461 Length=78882 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| |||||||| ||||| || || Sbjct 61729 CGCCAAGCGCCATCGCAAGGTGCTCCGTGACAACATCCAGGGAATCACGAAGCCGGCCAT 61788 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || |||||||||||||||||||| | || ||| | ||||||| |||| Sbjct 61789 CCGCCGCCTCGCCCGTCGTGGTGGAGTCAAGCGCATTTCCGGACTCATCTATGAGGAGAC 61848 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| || || |||| || || || ||| ||| Sbjct 61849 CCGTGGAGTTCTCAAGGTCTTCCTTGAGGGAGTAATCCGAGACGCCGTCACCTACTGCGA 61908 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || |||||||||||| ||||||| |||| || || |||| || ||||| Sbjct 61909 GCACGCTAAGCGCAAGACTGTCACCGCCATGGACGTCGTTTACGCCCTGAAGCGCCAAGG 61968 Query 16672 CCG 16674 ||| Sbjct 61969 CCG 61971 >seq1490 Length=657893 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| |||||||||||||||||||| || || || || Sbjct 578114 CGCCAAGCGCCATCGCAAGGTGCTTCGTGATAACATCCAAGGAATCACGAAACCCGCGAT 578173 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| ||||| || || ||||| |||| ||| | |||| || |||| Sbjct 578174 CCGCCGTCTCGCTCGCCGTGGAGGCGTGAAGCGCATCTCCGGACTTATCTACGAGGAGAC 578233 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||||||| || || |||| || || || ||| ||| Sbjct 578234 CCGCGGAGTGCTGAAGGTCTTCCTCGAGGGAGTCATCCGCGACGCCGTCACCTACTGCGA 578293 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || | ||||| ||||| Sbjct 578294 GCACGCCAAGCGGAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAACGCCAAGG 578353 Query 16672 CCG 16674 ||| Sbjct 578354 CCG 578356 >seq880 Length=127475 Score = 154 bits (170), Expect = 2e-33 Identities = 197/265 (74%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| |||||||| ||||| || | Sbjct 18471 CGCCAAGCGTCACCGCAAGGTC-CTGCGCGACAACATCCAGGGAATCACGAAGCCGGCCA 18413 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| || |||||||| || ||||||||||| |||| || || |||| ||||| | Sbjct 18412 TCCGTCGCCTCGCTCGTCGCGGCGGAGTCAAGCGCATCTCCGGGCTGATCTACGAAGAAA 18353 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC-- 16608 || || ||| | ||| ||||||| |||| ||| || || | |||| ||| Sbjct 18352 CCCGCGAAGTTCTCAAGCTCTTCCTAGCTGCCGTGGTCCGCGACGCCGT-CACT-TACTG 18295 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 ||||||||| || || ||||| |||||| ||||||| ||||||| || | || || || Sbjct 18294 CGAGCACGCGAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCA 18235 Query 16669 AGGCCGTAAGATTTATGGTTTTGGA 16693 || || | || || || |||||| Sbjct 18234 GGGACGCACTATCTACGGCTTTGGA 18210 >seq1504 Length=261502 Score = 152 bits (168), Expect = 8e-33 Identities = 181/242 (75%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| || || || |||||||| |||||||| ||||| || || Sbjct 23334 CGCTAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGAATCACGAAGCCGGCCAT 23275 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || ||||||||||||||||| |||| ||| | |||| || |||| Sbjct 23274 CCGCCGCCTCGCCCGCCGTGGTGGAGTCAAGCGCATCTCCGGACTCATCTACGAGGAGAC 23215 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--C 16609 || | || |||| | |||||| || ||||||| || || | |||| ||| | Sbjct 23214 CCGCGGAGTGCTGAAAGTGTTCCTCGAGGGAGTTATCCGCGACGCCGT-CACT-TACTGC 23157 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || || ||||| |||||| ||||||| ||||||| || |||| || ||| Sbjct 23156 GAGCACGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTGAAGCGCCAA 23097 Query 16670 GG 16671 || Sbjct 23096 GG 23095 >seq1419 Length=601844 Score = 143 bits (158), Expect = 4e-30 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || || || ||| |||| |||||||| Sbjct 310693 CTCCGCGATAACATCCAGGGCATCACGAAGCCCGCGATTCGACGTTTGGCCCGTCGTGGA 310752 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| ||| || |||| ||||||| || | ||| ||||| |||| Sbjct 310753 GGCGTCAAGCGTATCTCGGGACTGATCTACGAAGAGACCCGAGGCGTTCTGAAGGCCTTC 310812 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| || || |||| || || | ||| ||| ||||| || || ||||| ||| Sbjct 310813 CTCGAGGGAGTCATCCGCGACGCCGTTACCTACTGCGAACACGCGAAGCGCAAGACCGTC 310872 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||| | ||||| ||||||| || |||| || |||||| Sbjct 310873 ACCGCGATGGACGTCGTCTACGCCCTGAAGCGCCAAGGC 310911 >seq1150 Length=1226963 Score = 134 bits (148), Expect = 2e-27 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | || || || || || ||||| |||||||| ||||| || | Sbjct 970810 CGCCAAGCGTCATCGCAAGGTC-CTCCGCGACAATATCCAGGGAATCACGAAGCCGGCCA 970752 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || || ||||||||||| |||| || | |||| ||||| | Sbjct 970751 TCCGCCGCCTCGCTCGCCGCGGCGGAGTCAAGCGCATCTCCGGGCTCATCTACGAAGAAA 970692 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | |||| ||| ||||| || ||| || Sbjct 970691 CCCGCGGCGTCCTCAAGGTCTTCCTGGAATCCGTCGTCCGCGATGCCGTCACCTACTGCG 970632 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 ||||||| || || ||||| |||||| ||||||| ||||||| Sbjct 970631 AGCACGCGAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTA 970589 Score = 134 bits (148), Expect = 2e-27 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | || || || || || ||||| |||||||| ||||| || | Sbjct 976375 CGCCAAGCGTCATCGCAAGGTC-CTCCGCGACAATATCCAGGGAATCACGAAGCCGGCCA 976317 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || || ||||||||||| |||| || | |||| ||||| | Sbjct 976316 TCCGCCGCCTCGCTCGCCGCGGCGGAGTCAAGCGCATCTCCGGGCTCATCTACGAAGAAA 976257 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | |||| ||| ||||| || ||| || Sbjct 976256 CCCGCGGCGTCCTCAAGGTCTTCCTGGAATCCGTCGTCCGCGATGCCGTCACCTACTGCG 976197 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 ||||||| || || ||||| |||||| ||||||| ||||||| Sbjct 976196 AGCACGCGAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTA 976154 >seq1016 Length=89784 Score = 134 bits (148), Expect = 2e-27 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | || || || || || ||||| |||||||| ||||| || | Sbjct 1016 CGCCAAGCGTCATCGCAAGGTC-CTCCGCGACAATATCCAGGGAATCACGAAGCCGGCCA 958 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || || ||||||||||| |||| || | |||| ||||| | Sbjct 957 TCCGCCGCCTCGCTCGCCGCGGCGGAGTCAAGCGCATCTCCGGGCTCATCTACGAAGAAA 898 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | |||| ||| ||||| || ||| || Sbjct 897 CCCGCGGCGTCCTCAAGGTCTTCCTGGAATCCGTCGTCCGCGATGCCGTCACCTACTGCG 838 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 ||||||| || || ||||| |||||| ||||||| ||||||| Sbjct 837 AGCACGCGAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTA 795 >seq1534 Length=434027 Score = 125 bits (138), Expect = 1e-24 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || | ||||| ||||||| ||| ||||| || || Sbjct 186934 CGCCAAGCGCCATCGCAAGGTGCTCCGTTACAACATTCAAGGAACCACGAAGCCCGCCAT 186993 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || |||||||| ||||||||||| |||| || || |||| Sbjct 186994 CCGACGCCTCGCCCGTCGTGGAGGAGTCAAGCGAATCTCCGGCC--------GAGGAGAC 187045 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || ||||||| || || |||| ||| || || ||| ||| Sbjct 187046 CCGCGGAGTCCTAGAGGTCTTCCTTGAGGAAGTCATCCGTGACGCCGTCACCTACTGCGA 187105 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||||||| ||||||| ||||||| || | || |||||||| Sbjct 187106 GCACGCCAAACGCAAGACTGTCACCGCCATGGACGTCGTCTAAGCCCTCAAGCGTCAAGG 187165 Query 16672 CCG 16674 ||| Sbjct 187166 CCG 187168 >seq581 Length=465 Score = 116 bits (128), Expect = 6e-22 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| |||||||||||||||||||| || || || || Sbjct 274 CGCCAAGCGCCATCGCAAGGTGCTTCGTGATAACATCCAAGGAATCACGAAACCCGCGAT 333 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| ||||| || || ||||| |||| ||| | |||| || |||| Sbjct 334 CCGCCGTCTCGCTCGCCGTGGAGGCGTGAAGCGCATCTCCGGACTTATCTACGAGGAGAC 393 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||||||| || || |||| || || || ||| ||| Sbjct 394 CCGCGGAGTGCTGAAGGTCTTCCTCGAGGGAGTCATCCGCGACGCCGTCACCTACTGCGA 453 Query 16612 GCACGCTAAACG 16623 |||||| || || Sbjct 454 GCACGCCAAGCG 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073771852466