Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_006940.2 Length=40793 Score E Sequences producing significant alignments: (Bits) Value seq31 641 1e-179 >seq31 Length=5916 Score = 641 bits (710), Expect = 1e-179 Identities = 975/1372 (71%), Gaps = 52/1372 (4%) Strand=Plus/Plus Query 28905 GAATACCAGAAAATAATGACGTCGTTTATGCTACAGCACCCACGTTGCAATATATGGTGC 28964 ||||| || ||| |||||||| | |||||| | |||||||| |||||| | ||| || Sbjct 3209 GAATATCAAAAACTAATGACGCGGCATATGCTGCGTCACCCACGCTGCAATGTGTGG-GC 3267 Query 28965 GGTA-TGGGTGGCGGCAAGACCTCGTCGACAATGTGGGTGCTTAGCCGCCTGTTCC---- 29019 | | |||| |||||||||| | | || |||||| ||| | ||||||||||| Sbjct 3268 GACAATGGGCTCCGGCAAGACCGGGGCCACCATGTGGACGCTGAACCGCCTGTTCCAATC 3327 Query 29020 ---------GTAA---TGGGC------AACTTAATGAC-GACGACCGAGTGTTAATTCTG 29060 | || |||| |||| | ||| | ||| || ||| | || ||| Sbjct 3328 CTCAAAGCTGGAAGATTGGGACCCGGTAACTCA--GACCGGCGATCGGGTGCTTATCCTG 3385 Query 29061 GCCCCTTTACGTGTTGCGTCAGGTACGTGGCCAGCAGAACAAGAGAAATGGAACTTCCCG 29120 || || | || ||||| ||||| || ||||| || ||||| | ||| ||| | ||||| Sbjct 3386 GCGCCGCTGCGCGTTGCATCAGGCACCTGGCCGGCCGAACAGGTGAAGTGGGATTTCCCA 3445 Query 29121 TGTCTGAGTGTAGTAGATGCAACTGGTTCTGAGAAGC-GAC-GCATCGCGGCGCTGGAGT 29178 || ||| | || || || | || || | ||| || ||| || | ||||||||| | Sbjct 3446 TGCCTGCGCGTCGTGGACGGCACCGG--CAAAGAGGCCGACCGCCTGGCGGCGCTGAAC- 3502 Query 29179 CAGACGCT---AACGTGGTTTGCACAAATTACGAAGTTATAGAATGGCTTATTGACTACT 29235 |||| | |||||||| ||| || || || || || || ||| | | | ||| | Sbjct 3503 --GACGATTTCAACGTGGTGTGCGTTAACTATGAGGTGATCGACTGGTTGGTCGGCTATT 3560 Query 29236 ACGGCAAAGACGACTGGCCTTTTACCGTTATCGTTGCCGATGAGAGCACGAAGCTGAAAT 29295 ||||| |||| ||||| || ||||| || |||||||| ||| |||||||| |||| Sbjct 3561 ACGGC---GACGCGTGGCCATTCACCGTCATTGTTGCCGACGAGTCGACGAAGCTTAAAT 3617 Query 29296 CGTTCCGTAGCCGTTCTGGCGGGAGCAAGAGGGCAAAGGCGCTTAGTAAGGTGGCGTTCG 29355 ||||||| ||| || ||||| |||||| | || ||| | || ||||| || ||||||| Sbjct 3618 CGTTCCGCAGCAAATCCGGCGGTAGCAAGCGCGCGAAGACACTCAGTAAAGTAGCGTTCG 3677 Query 29356 GTAAAGTTAAGCGTTTCATTAACCTGACCGGTACACCATCACCAAACGGCCTCAAAGACT 29415 |||| || ||||| || || || ||||||||||| |||||||| |||||||||||||| Sbjct 3678 GTAAGGTGAAGCGCTTTATCAATCTGACCGGTACGCCATCACCGAACGGCCTCAAAGATC 3737 Query 29416 TGTGGGGTCAGAACTGGTTCATCGACGCCGGCGAGCGCCTCGGGTCTTCGTACACAGCAT 29475 |||||||||||||||||||| |||| ||||||||||| ||||| || ||||| || | Sbjct 3738 TGTGGGGTCAGAACTGGTTCGTCGATGCCGGCGAGCGTCTCGGCAGCTCTTACACTGCTT 3797 Query 29476 TCACAGACCGATGGTTTAACTCGGTACAGAAAGGGAAGTCAGCTATG--GCACGGGAATA 29533 |||| || || ||||| | |||||| |||||| ||| ||| || | || || ||||| Sbjct 3798 TCACCGATCGCTGGTTCACCTCGGTGCAGAAA-GGAGATCA-TTACGCCGCCCGCGAATA 3855 Query 29534 CCACTCTCGCCCTGGCGCCGATAACGAGATTCACCAGAAAATGAAGGATATTAGCCTGAC 29593 | | |||| || ||||| | |||||| ||||||||| |||| || | || ||||| Sbjct 3856 CGCGCCCCGCCGCGGTGCCGACACCGAGATCCACCAGAAACTGAAAGACGTCAGTCTGAC 3915 Query 29594 CATTGATGCTGCCGAGTGGTTCGGTTGTGAAGCGCCCGTTATTGTGCCGGTTGAAATTGA 29653 | | || || ||||||| || || ||||| ||| || | || ||||| | | || Sbjct 3916 CGTGGACGCGGCCGAGTTCTTTGGCTGTGACAAGCCTGTCGTCGTCCCGGTCGTCGTCGA 3975 Query 29654 CCTGCCGAAGAAAGCACGTCAGGCGTACATCGATATGGAGGAGAAGTTATTCGCAGAACT 29713 |||| || || || ||||||||| || |||||||| || ||||||| ||||| Sbjct 3976 TATGCCACCAAAGGCGCGCAAGGCGTACAAGGAAATGGAGGAACAGCTATTCGCCGAACT 4035 Query 29714 GGAGAGTGGGGAAGTTGAAGCGGCTAACGCCGCGGCGAAGACGTCGAAGTGTTTGCAGAT 29773 ||| || || || || |||||||| ||||| ||||| || | || || ||||||| Sbjct 4036 GGATAGCGGCGAGGTCGAAGCGGCCAACGCGGCGGCCCGTACCGCCAAATGCCTGCAGAT 4095 Query 29774 TGCATCAGGCGCCGTGTATGTATCGGGGCCAGACGGAGA---AGCTACCAAAGAATGGGA 29830 || || || |||||||| | || |||||| || ||||| || |||| Sbjct 4096 CGCCAGCGGGGCGGTGTATGTGACCGGCGAAGACGGCGAGCGGTCTACC---GAGTGGGC 4152 Query 29831 GAAAGTGCACGATACGAAACTGGATGCGCTCGAGTCCATTGTAGAGGAGTTACAGGGTGC 29890 ||| |||||||| |||| ||||| || || ||||| ||| | || ||||| || || Sbjct 4153 GAAGGTGCACGACGCGAAGCTGGACGCCCTGGAGTCGATTATCGACGAGTTGTCCGGCGC 4212 Query 29891 GCCGTTGTTGGTGGCCTATCAGTTCAAACACGAACTGGAGCGCATCCTTAAGCGATTCCC 29950 ||| |||||||||||||||||| ||| ||||| |||| ||||||| | || || ||||| Sbjct 4213 CCCGCTGTTGGTGGCCTATCAGTACAAGCACGACCTGGCGCGCATCTTGAAACGGTTCCC 4272 Query 29951 GCAGGCTCAGGCCTTTTCCAAAGGTGCTAAAGGTAATAAGCAGATGGAATCTTGGAACCG 30010 |||||| |||| || || || ||| ||||| ||| | || |||||| Sbjct 4273 GCAGGCGCAGGAGTTCAAAAAGGGCGCTGCCGGTAACCGCCAGGTTGAGCGCTGGAACAA 4332 Query 30011 CGGGGAAATCGAGATTTTGTGCGTGCACCCTGCATCGGCGGGCCATGGTTTGAATTTACA 30070 || | ||||| || |||||||| ||||| || || |||||||| || | || | || Sbjct 4333 AGGTCAGATCGAAATCTTGTGCGTTCACCCGGCGTCCGCGGGCCACGGCCTCAACATGCA 4392 Query 30071 GGACGGCGGGCATCATCTGGCGTTTATTTCGCAAGGC-TGGAACCTGGAGCACTATTTGC 30129 ||| |||||||| || ||||| ||| || || | | |||||| | |||||||| || Sbjct 4393 GGATGGCGGGCACCACCTGGCATTT-TTCAGCGACACATGGAACTTTGAGCACTACGCGC 4451 Query 30130 AGGTTGTCGAGCGTATAGGTCCTGTACGCCAGAAACAGGCTGGCCACGAGCGTCCAGTGT 30189 || | || |||||||| ||||| || ||||||| ||||| || ||| ||| || |||| Sbjct 4452 AGATCGTGGAGCGTATCGGTCCGGTGCGCCAGATGCAGGCCGGTCACCCGCGCCCGGTGT 4511 Query 30190 TCCTGTATCACATAGTCGCTAAAGACACGCTGGATGAGGTCGTTGCCGCGCG 30241 || | || | || || || | ||||||||| || || | ||||| || Sbjct 4512 TCATTTACCTGATCCAGGCCAAGGGCACGCTGGACGAAGTGCTGGCCGCCCG 4563 Score = 379 bits (420), Expect = 5e-101 Identities = 699/1018 (69%), Gaps = 10/1018 (1%) Strand=Plus/Plus Query 24708 CTCGATACTGAAACATTTTCAGAAGCCGATTTaaaaaaaGTCGGTTCCTATGCTTACGCC 24767 |||||||| || || | ||| |||||||| || |||||| ||| ||||||| || || Sbjct 172 CTCGATACCGAGACGTATTCCGAAGCCGACTTGAAAAAATGCGGCGCCTATGCGTATGCG 231 Query 24768 GAACATCCGACTACCGAAATTGTTATCTGCACCTACGCTTTCGATGAAGGCCCTGTGCAA 24827 ||||| | |||||||||| | ||||||| |||||| ||||| || | ||||| Sbjct 232 GAACACCTATCTACCGAAATCATGATCTGCAGCTACGCGTTCGACGATGAAAAGGTGCAG 291 Query 24828 GTATGGGACGCCACCGACGGCAGCGATATGCCGCGTGATTTGCGTCGGGCGATGCTAAAG 24887 |||||||||||||||||||||||| |||||||| || || || ||| ||| | Sbjct 292 GTATGGGACGCCACCGACGGCAGCCGCATGCCGCGCGACCTGAAACGTGCGCTGCGCGAA 351 Query 24888 CTGCAAAAACCAGACAGCAATCTCAAACTGGTAGGCCAAAACTTCCTTATGTTCGACCGA 24947 ||| | || || | | | | ||||||| || ||| ||| |||||||||| Sbjct 352 CTGGCGAGGCCCGATACCGAAAGCCGACTGGTAATGCAGAACGGCCTGCTGTTCGACCGG 411 Query 24948 CCAGTTATTAAGCATTGCTGGGGATTCGAACTCCTGGTAGAAAACATTATAGACACTATG 25007 | | || | |||||||| | ||| ||| | | || || |||||| ||| Sbjct 412 CTGCTGATGCGAGAATGCTGGGGCTACGATATCCCGCCGGCCAATATCGAAGACACCATG 471 Query 25008 ATAGTCGCGTTCCGACATGCCCTCCCGGGTTCACTGGCCGCGCTGTGTGAGGTTTTAAAC 25067 || | |||||||| || || || |||||| |||| || || || || || | Sbjct 472 ATCATGGCGTTCCGCCACGCGCTGCCGGGTAGCCTGGATGCACTATGCACCGTGCTAGGC 531 Query 25068 ATTGACGCAAGCATG--GCTAAGGATAAACGCGGTAAGGCGCTGATACAGCGATTCAGTA 25125 | || | |||| || ||||| || || ||||||||||| | || ||| ||| Sbjct 532 GTCGATG--AGCAGAACGCCAAGGACAAGGCGGGCAAGGCGCTGATCAACCGCTTCTGTA 589 Query 25126 AGCCTACGCCCAAGAACTATAAGATTCGACGTTATACTGCCGATACCCACCCAAAAGAGT 25185 |||||||||| ||| || ||| | || || || || |||| ||| ||||| | |||| Sbjct 590 AGCCTACGCCTAAGTCGTACAAGGTGCGCCGCTACACGGCCGCTACGCACCCCGACGAGT 649 Query 25186 GGGCAGAATTTATTGCATACGCAAAAAGCGACATTACGTCCATGCGTGAAGTGTATAAGA 25245 |||| |||| || ||||| |||||||| ||||||||| || |||||| | Sbjct 650 GGGCCAAATTCATCAAGTACGCCCGCAGCGACATCCTGTCCATGCGCGAGGTGTATTACC 709 Query 25246 AAATGCCTAAGTGGGGGAATTCTGAGTTCGAAGACCGCGTGCTGC-ACTTAGACCAGGTG 25304 || || | ||||| || | ||| || || | ||| |||| |||||| || Sbjct 710 GCATCCCGACCTGGGGCAACACCGAGAAGGAGAACGAAATCCTGGTACTT-GACCAGCTG 768 Query 25305 ATTAATGACCGAGGATTTAAGGTTGATGTGGCATTGGCGGAAGCAGCGATTGAAGCAGTC 25364 || || ||||| || || || || || | ||||| | |||||||| || || || Sbjct 769 ATCAACGACCGCGGCTTCTGTGTGGACGTCGACTTGGCCAAGGCAGCGATCGAGGCCGTG 828 Query 25365 ACGCGCCATAAAGAAGAGTTACAGGAAGAAGCC--CAACGTAAATATGGCGGTTCACTAA 25422 |||||||| || ||||| | |||| || ||| ||| | | || ||| | || | Sbjct 829 ACGCGCCACAAGCAAGAGCTGCAGGCTGAGGCCACCAAGG--AGTACGGCAGCGGCCTGA 886 Query 25423 CCGGCAAAGACTTCTTGCCTATTTTACAGGAGCTAGCGCCAGCGCACCGCATACACAACG 25482 |||| |||| |||| | | | || || ||||| ||||| || | |||| Sbjct 887 CCGGGGCCTCCTTCCTGCCGACGCTGCGCGACCTGGCGCCGGCGCATGAAATCCCGAACG 946 Query 25483 CACAGAAGTCAACACTAAACGATTTGCTGGCGGATGAGGATTTACCGGACGACGCCCGCA 25542 | ||||| || || |||||||| ||||||| || || | |||||||| || ||| Sbjct 947 CGCAGAAATCGACGCTAAACGACCTGCTGGCCGACCCCGACCTGCCGGACGAGGCGCGCG 1006 Query 25543 CTATTATCGAGATGCGTCTCGGGGCTGCTTCTACCGCATCGACGAAATACGCGCCGTTGC 25602 | ||||| ||||| || || || || || ||||||||||| |||||||| ||| ||| Sbjct 1007 AGCTGATCGAAATGCGCCTGGGCGCGGCGTCCACCGCATCGACAAAATACGCTCCGCTGC 1066 Query 25603 TGTTAGGCCGTTCTTCAGATGACCGCCGCCGTGGTTGCCTGCAATACGGAGGAGCGAAGC 25662 || | |||| || || | |||||||| || |||||||| |||||||| || || | Sbjct 1067 TGCTCGGCCTGTCGCGCGACGGGCGCCGCCGCGGGTGCCTGCAGTACGGAGGGGCTAAAC 1126 Query 25663 GAACATTGCGGTGGGCGGGGAAAGGTTTTCAGCCGCAAAACCTGGCGCGCGGGTATTA 25720 | || |||| ||||| || ||||| || |||||||| ||||||||||||||||| || Sbjct 1127 GCACGCTGCGCTGGGCCGGTAAAGGCTTCCAGCCGCAGAACCTGGCGCGCGGGTACTA 1184 Score = 113 bits (124), Expect = 1e-20 Identities = 139/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 27975 TGGGCGCTCCTGACCTGCTGGTGATTCTCCCCGGTGGCATCATCTGGTTCGTCGAGGTGA 28034 |||| || || || ||||||||| |||| || | ||| || | |||||||||||||||| Sbjct 2567 TGGGTGCCCC-GATCTGCTGGTGCTTCTGCCGAGAGGCGTCGTGTGGTTCGTCGAGGTGA 2625 Query 28035 AGAAAGACGAAAACACGAAGCCAGACCCGCACCAGTTGCGCGAGCACGAGAGGATGCGTA 28094 |||||||||| ||| |||||||||||||| ||||||||||| | |||| | Sbjct 2626 AGAAAGACGAGGCCACCGGCACAGACCCGCACCAGGCACGCGAGCACGAACGCATGCAAA 2685 Query 28095 AACGCGGCGCAAATGTTTTTGTTGTTGGGTCGAAGAAACAGGTTGATAAATTAATAGAAC 28154 | |||||||| ||||| ||| || || || |||||||| | |||| | | Sbjct 2686 AGCGCGGCGCCAATGTGTTTACCGTCGGCAGCAAATCGCAGGTTGACAGCCTAATCGCAA 2745 Query 28155 ACTATTATA 28163 ||||||||| Sbjct 2746 ACTATTATA 2754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130413580946220