Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1526 120 3e-22 seq1419 98.7 1e-15 >seq1526 Length=386723 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| |||||||| | ||| | || | Sbjct 246537 ATGCAAATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAAGTCGAGGCGTCG 246478 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 246477 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 246418 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| ||||||||||| | | | | |||||||||| ||| Sbjct 246417 CAGCGCCTTATCTTCGCTGGCAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTACAAC 246358 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || ||||| ||| ||||||||||||| | || | ||||||| Sbjct 246357 ATCCAGAAGGAATCCACTCTCCATCTGGTCCTCCGTCTCCGTGGAGGAA 246309 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || ||||| | |||||| | ||| | || | Sbjct 246310 AATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTAGAAGTCGAGGCTTC 246251 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| |||||| | ||||| ||||| ||||| ||||| || |||||||| || Sbjct 246250 GGACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCA 246191 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || || || || | || | |||||||||| || Sbjct 246190 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGAAGGACTCTCAGCGACTACAA 246131 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA---AAATATG 27004 ||| || || ||||| || ||||||||||||| | || | || || | ||||||| Sbjct 246130 CATCCAGAAGGAATCCACGCTCCATCTGGTCCTCCGTCTCCGTGGTGGCAACTAAATATG 246071 Query 27005 ATTAGTTTGA 27014 | ||||||| Sbjct 246070 -TGAGTTTGA 246062 >seq1419 Length=601844 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 538264 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAG 538323 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| |||||||| || | |||| | |||||||||| ||| Sbjct 538324 CAGCGCCTTATCTTCGCTGGCAAGCAACTCGAGGACGGAAGAACCCTCAGCGACTACAAC 538383 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || |||||||| || || |||| ||||||| Sbjct 538384 ATCCAAAAAGAGTCGACCCTCCACTTGGTCCT 538415 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| |||||||| | || | || | Sbjct 538935 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAGGTCGAGGGATCT 538994 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || ||| ||||| ||||| ||||| || ||||||||||| Sbjct 538995 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGATCAG 539054 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| || || ||||| | | | | |||||||||| ||| Sbjct 539055 CAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAAC 539114 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || || || || || |||| || || || | ||| | || || || Sbjct 539115 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTTCGTGGTGGCAA 539164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478653054116640