Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1526 116 3e-21 seq1419 113 4e-20 >seq1526 Length=386723 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| |||| ||| | ||||||||||| Sbjct 246537 ATGCAAATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAAGTCGAGGCGTCG 246478 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 246477 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 246418 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||||||||||| | | | | | ||||||| || ||| Sbjct 246417 CAGCGCCTTATCTTCGCTGGCAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTACAAC 246358 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 246357 ATCCAGAAGGAATCCAC 246341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || ||||| | || ||| | ||||||||||| Sbjct 246310 AATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTAGAAGTCGAGGCTTC 246251 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | ||||| ||||| ||||| ||||| || |||||||| || Sbjct 246250 GGACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCA 246191 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || |||||||| || || || | || | ||||||| || || Sbjct 246190 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGAAGGACTCTCAGCGACTACAA 246131 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || ||||| || Sbjct 246130 CATCCAGAAGGAATCCAC 246113 >seq1419 Length=601844 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| |||||||| | || ||||||| Sbjct 538204 ATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATTACCCTGGAGGTCGAGGGGTCT 538263 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 538264 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAG 538323 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || |||||||||||||| || | |||| | ||||||| || ||| Sbjct 538324 CAGCGCCTTATCTTCGCTGGCAAGCAACTCGAGGACGGAAGAACCCTCAGCGACTACAAC 538383 Query 24171 ATTCAAAAAGAATCTAC 24187 || |||||||| || || Sbjct 538384 ATCCAAAAAGAGTCGAC 538400 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| | | |||||| | || || || || | || || || | |||||| | || || | Sbjct 537740 CAATCGACATGCAAATCTTCGTCAAGACTCTCACGGGGAAGACCATTACCCTTGAGGTTG 537799 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 |||| |||||| ||||| | ||||| ||||| ||||| || ||||| |||| Sbjct 537800 AGGCTTCCGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTC 537859 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 ||||||| ||| | |||| | || ||| ||||| || ||||| | | | | | |||||| Sbjct 537860 CCGATCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACCCTCAGCG 537919 Query 24163 ATTATAACATTCAAAAAGAATCTAC 24187 | || ||||| || || || || || Sbjct 537920 ACTACAACATCCAGAAGGAGTCCAC 537944 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| |||| ||| | || ||||||| Sbjct 538935 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAGGTCGAGGGATCT 538994 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || ||| ||||| ||||| ||||| || ||||||||||| Sbjct 538995 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGATCAG 539054 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || |||||||| || ||||| | | | | | ||||||| || ||| Sbjct 539055 CAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAAC 539114 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 539115 ATCCAGAAGGAGTCGAC 539131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || ||||| |||||||| | || || |||| Sbjct 537975 AATGCAAATCTTCGTCAAGACGCTGACCGGAAAGACGATTACCTTGGAGGTTGAGGGATC 538034 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || ||||| || || || ||||| || || || || Sbjct 538035 CGACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCA 538094 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | | ||||||||| ||||| |||| | | | | || || || || Sbjct 538095 GCAGCGATTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGAGTGACTACAA 538154 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| |||||||| || || Sbjct 538155 CATCCAAAAAGAGTCAAC 538172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429927815362110