Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1526 87.8 1e-12 >seq1526 Length=386723 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || ||||| ||||| || |||||||||||| Sbjct 246311 CCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 246370 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | ||| ||||| || | ||||| ||||| ||||| ||| Sbjct 246371 AGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGG 246430 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | ||||| | ||| Sbjct 246431 ATTCCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCCGACGCCTCGA 246488 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| || ||||||||||| || || || || || ||||| Sbjct 246489 CTTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 246537 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| |||||||| ||||| || |||||||||||| | || | ||||| Sbjct 246098 AGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCC 246157 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || || ||||| ||||| ||| | || || ||||| Sbjct 246158 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCC 246217 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | ||| ||| | |||||||| Sbjct 246218 TGGATCTTGGC--CTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGG 246275 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | ||||||||||| || || || || ||||||||| Sbjct 246276 TCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 246310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405080288390380