Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1527 206 2e-48 seq1316 107 1e-18 seq1510 89.7 3e-13 seq1150 87.8 1e-12 seq1347 82.4 5e-11 >seq1527 Length=269439 Score = 206 bits (228), Expect = 2e-48 Identities = 221/292 (76%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 6169 CCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCT 6228 |||| ||||| ||||| || || ||| | |||||||| ||||| ||||| || || Sbjct 102510 CCCTTAACGTCAATCGCAACGTTCTCGACCCCTTCTACCGATACAAGATGCCCCGACTCC 102451 Query 6229 GCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAG 6288 || |||||||| || || |||||||| || || || ||||| | ||||||| |||| Sbjct 102450 TGGCGAAGGTCGAAGGAAAAGGAAACGGCATCAAGACGGTCATCGCCAACATGGCTGATA 102391 Query 6289 TCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTG 6348 |||| ||| |||| | ||||||| | |||||||||||||| || ||||| ||||| || | Sbjct 102390 TCGCGAAGTCGCTGGAACGCCCTCCGACCTACCCGACGAAGTACTTCGGCTGCGAGCTCG 102331 Query 6349 GCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACT 6408 |||| || || | |||| |||| |||||||||| |||||| |||||| ||| || Sbjct 102330 GCGCGCAAACCAACATTGACAACAAGAACGAGCGCTACATCGTCAACGGAGAGCACGACG 102271 Query 6409 CTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTG 6460 | || ||||| |||||| | | ||||| || || |||||||| || || || Sbjct 102270 CCGCGAAGCTTCAGGACATCTTGGACGGTTTCATCCGCAAGTTCGTTCTCTG 102219 >seq1316 Length=19722 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 5/79 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 10873 AAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 10814 Query 25957 TAATCCTTTCATGCGCGTC 25975 |||||| |||||||||||| Sbjct 10813 TAATCCATTCATGCGCGTC 10795 >seq1510 Length=768594 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||| |||||||||||||||| ||||||||| ||| Sbjct 262954 CTCTCTCTTCAAAGTACTTTGAAACTTTTCCTCACGGTACTTGTTTGCTATCGGTTTCGT 263013 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 263014 AGTCGTATTTAGCTTTA 263030 >seq1150 Length=1226963 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||| |||| |||||||| |||| |||||||||| |||||||| ||| Sbjct 587954 TCTCTCTCTTCAAAGTGCTTTGCAACTTTCTCTCATGGTACTTGTTTGCTATCGGATTCG 587895 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 587894 TAGTCGTATTTAGCTTTA 587877 >seq1347 Length=405773 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || || |||||||| |||| |||| ||| || |||||| ||| || Sbjct 393127 TTACCGGCGAAGATCAGTCGTTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 393186 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||||| || | || ||| || || | || || |||||||||||| Sbjct 393187 GCCTTAACATTCTCGATCGAGTCCGAGGCTTCCACCTCGAGGGTGATCGTTTTACCCGTC 393246 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | |||||| ||||| |||||||| Sbjct 393247 AGGGTTTTGACGAAAATCTGCAT 393269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940823652022