Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq893 143 3e-29 >seq893 Length=1694367 Score = 143 bits (158), Expect = 3e-29 Identities = 331/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 ||||||||||||||||| | ||| | ||| ||||| || || || | | ||| || || Sbjct 1631360 TTGTTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATC 1631419 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATTACT 63339 | ||| ||||| || || ||||| |||| ||| || | |||| |||||| || | | Sbjct 1631420 AGACCGTTGGAGGTGCCGTTGGTACCTGCGATCATCG-TTCCCGAGGCACGGATGC-AGT 1631477 Query 63340 AATTGATA-GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 | | || | || || || || || |||||||| | ||||| | | || | Sbjct 1631478 GAGCGTTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTGCCACAGGGTCT 1631537 Query 63399 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63458 ||||||| || || || || ||| | || || || || | ||| ||| Sbjct 1631538 TGAAGATGCCGTCGATGGAGTCGTCGTGCATCGTCAGGAGGAAGCACGAACTCATCTGGG 1631597 Query 63459 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518 | | ||||| || || || | |||||| || ||||| |||||||| || || | Sbjct 1631598 GCTTGCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCGACA 1631657 Query 63519 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 63577 || ||||| || || || |||| ||| || ||| | ||| || | ||| || || ||| Sbjct 1631658 TGAGGTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTG-TGGACTCCCACGGCTACA 1631716 Query 63578 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63637 ||||| | ||||||||| || | || ||||||| ||| || |||| |||||| || Sbjct 1631717 CGCATAAGCATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGAC 1631776 Query 63638 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63697 ||||| || || || || |||||| |||| | ||||| || || || | || | Sbjct 1631777 CGTTCCAGGGTCTTGAACCCGAAATAGGTGTACGCGAAGTCGCGGTCATACACGATTGCG 1631836 Query 63698 GAGTTGAGTTT 63708 ||||||||||| Sbjct 1631837 GAGTTGAGTTT 1631847 Score = 100 bits (110), Expect = 4e-16 Identities = 240/360 (67%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 61951 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62010 ||| ||||| | ||||| ||||| |||| || || || |||||| |||| || | Sbjct 1629974 ATAGCTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCG 1630033 Query 62011 GTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 62069 ||| || ||||| | || || ||| || | ||||||||||| || || || || || Sbjct 1630034 GTCGGCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC 1630093 Query 62070 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCC 62126 || || ||| | |||| || | || || |||||||| || | | || ||| Sbjct 1630094 -CTGAAGATCCTTGGGAATGTCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCT 1630152 Query 62127 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 62186 ||||||| || || | ||| | || ||| | | || | || ||||| |||| Sbjct 1630153 CGTTCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGAT 1630212 Query 62187 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62246 | || | ||||| || || || | || | ||| ||||||| || ||| ||||| | Sbjct 1630213 TGACGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCT 1630272 Query 62247 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62306 | | ||||| || || || | || ||||| || || || || ||||| ||||| |||| Sbjct 1630273 CAATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCA 1630332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619628335200