Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1419 113 4e-20 seq1526 105 6e-18 seq1399 84.2 2e-11 >seq1419 Length=601844 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || | ||||| | || || ||| |||| Sbjct 538432 ATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATCACTCTTGAGGTCGAGGGGTCT 538491 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || || || ||||| || ||||| Sbjct 538492 GACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAG 538551 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || || ||||||| |||||| | |||| ||||| Sbjct 538552 CAGCGATTGATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACTCTCAGCGACTACAAC 538611 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 538612 ATACAGAAGGAGTCGACCCTCCACTTGGTCCT 538643 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| ||||||||| || || ||||| ||||||| || | || || | || || || Sbjct 537969 CGGAGGAATGCAAATCTTCGTCAAGACGCTGACCGGAAAGACGATTACCTTGGAGGTTGA 538028 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | || ||||| |||||| ||||| || ||| || || || || ||||| || Sbjct 538029 GGGATCCGACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCC 538088 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| ||||| | || ||||||||||| || | || |||| |||||| || | || Sbjct 538089 AGACCAGCAGCGATTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGAGTGA 538148 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || || || || || || Sbjct 538149 CTACAACATCCAAAAAGAGTCAACCCTCCACTTGGTCCT 538187 >seq1526 Length=386723 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| ||||||| || ||||||| | ||||| ||| | || Sbjct 246310 AATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTAGAAGTCGAGGCTTC 246251 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 246250 GGACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCA 246191 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | || || | | ||| | |||| ||||| Sbjct 246190 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGAAGGACTCTCAGCGACTACAA 246131 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||||||||| ||| | || || Sbjct 246130 CATCCAGAAGGAATCCACGCTCCATCTGGTCCT 246098 >seq1399 Length=49110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || | ||||| | || ||||| ||| ||| | || || ||| | ||| Sbjct 13477 ATGCAAATCTTCCTCAAGACCCTCACGGGTAAGACCACCACTCTTGAGGTCGAGGCCTCT 13418 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| |||||| ||||| ||||| || | ||| Sbjct 13417 GACACTATCGAAAATGTAAAGGTCAAGATCTTTGACAAGGAAGGCATTCCTCCCGGCCAG 13358 Query 25119 CAGCGGATTATTTTTGCCGGCAAACA 25144 ||||| | ||||||||||| ||||| Sbjct 13357 CAGCGCTTGATTTTTGCCGGGAAACA 13332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319750789030