Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq964 118 1e-21 >seq964 Length=244507 Score = 118 bits (130), Expect = 1e-21 Identities = 425/660 (64%), Gaps = 6/660 (1%) Strand=Plus/Plus Query 92937 ATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGT 92996 |||| |||||||| ||||||| || || ||||| || | | || || || | | Sbjct 33782 ATTCGATGTACTGGGACATCAGGTCGCAGTTCATGCCAATCATGTCCACGGGAAGCGACT 33841 Query 92997 CGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTAT 93056 |||| | | || | |||||| || ||||| | ||||| ||| ||| || Sbjct 33842 CGGTGAGATACTCCTGCTCGATCTTCACCGCTTCACGGATAATTTC-ATTGATCTTCTCG 33900 Query 93057 TTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCT 93115 || | || || || | | ||| |||||||| | || || |||||| || | ||| Sbjct 33901 TTCGAGGGCTTCTGCTCCAGATACTTGTACATAAGACAGGCGAAGTCGCGGTGAAGTCCT 33960 Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 |||||||| || |||| ||| || ||| || | || || | |||||| || |||||| Sbjct 33961 TCGTCTCGGGAGATCAGCTCGTTACTGTGGGTGAGTCCAGGCATCAGTCCACGCTTCTTG 34020 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || | ||| || ||| || ||||| || ||||| ||||| || || || Sbjct 34021 AGCCAGAAGATGGCAGCGAAGGAACCCGAGAAAAAAATGCCTTCAACGGCGGCGAACGCG 34080 Query 93236 ACAATAC--GTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | | || |||| | || ||| || || |||||| | |||||||||| Sbjct 34081 ATGACACGAGTTC--CGAAGGAAGCGTTCTTGTCGCCGATCCAGCGGAGCGCCCAATCGG 34138 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCG 93353 | || ||||| || || || | || | ||||| || || | ||||| | | Sbjct 34139 CCTTCTTCTTGATGCAGGGGAACTCTTGCAGGGCGTTGAAGAGCATGTTGCGCTCTTTGG 34198 Query 93354 AATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTG 93413 || | ||| | ||||| | || ||||| || || |||| ||| | | Sbjct 34199 GGTCGATGACGTAAGCTTCGATCATTTTGGAGTACATCTCGGAGTGGATGCCCTCTACCG 34258 Query 93414 CAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCT 93473 | || ||||| | ||| || | ||||| | |||| || || || | || | || Sbjct 34259 CCATCTGGAAGCTGTAAAAGGAGAGTGCTTCGGGCATCTTGACCTCCTGGGTGAAGCGCT 34318 Query 93474 CTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTA 93533 | ||||| ||||||||||| || ||||| || || || || || |||| | | || | Sbjct 34319 CGACGAGGTTTTCATTGACAATTCCATCCGAAGCGGCGAAGAACGCCAGCACACGCGAAA 34378 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 | || | ||| || | || || || | ||| | ||| ||||||||| ||||||| Sbjct 34379 TGAAGAACTGCTCGTCGGCGTTCAGATTGTTCCAGTGGGACAGATCTTTTCCGAGATCGA 34438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849927292880