Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq652 109 5e-19 seq1419 98.7 8e-16 seq988 91.5 1e-13 seq1117 89.7 4e-13 seq1347 87.8 2e-12 seq893 84.2 2e-11 >seq652 Length=32697 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| | ||| | ||||| ||| || Sbjct 6890 ATGCAGATCTTTGTGAAGACCCTTACTGGAAAGACGATTACTTTGGAAGTCGAAGGGTCC 6949 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || || ||||||||||||||||| ||||| || ||||| Sbjct 6950 GATTCGATCGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCAG 7009 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| ||| | |||||| ||||||| || ||| |||||| Sbjct 7010 CAGCGACTTATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCAACGACTACAAC 7069 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||| | || | || || ||| Sbjct 7070 ATCCAGAAGGAGTCAACTTTGCATCTCGTTCTCCGTCTTCGTGGTGGT 7117 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| ||||| || ||| | Sbjct 6662 ATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGTTCT 6721 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| || || || ||||||||||| || || || ||||| Sbjct 6722 GACTCGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 6781 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | ||||| ||| || || ||| |||||| Sbjct 6782 CAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTACAAC 6841 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||||| |||||||| | ||||| || Sbjct 6842 ATCCAGAAGGAGTCCACGCTTCATTTGGTTTTGCGCCTTCGCGGTGG 6888 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || ||| | || || || || |||| ||||| || ||| Sbjct 6431 AAGATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGT 6490 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | || | |||| || || || ||||||||||| || || || ||| Sbjct 6491 TCTGACTCGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGAT 6550 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || |||||||| || || ||||| ||| | ||||| ||| || || ||| ||| Sbjct 6551 CAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTAC 6610 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 6611 AACATCCAGAAGGAGTCCACC 6631 >seq1419 Length=601844 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || || | || ||||| || || | || Sbjct 537748 ATGCAAATCTTCGTCAAGACTCTCACGGGGAAGACCATTACCCTTGAGGTTGAGGCTTCC 537807 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || ||||||||||| ||||| |||||||| Sbjct 537808 GACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 537867 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | || || ||| ||| || ||| |||||| Sbjct 537868 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAAC 537927 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||| | ||| | || | |||||||| Sbjct 537928 ATCCAGAAGGAGTCCACTTTGCATCTCGTTCTTCGTCTTCGCGGAGG 537974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||||||||| || || | Sbjct 538432 ATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATCACTCTTGAGGTCGAGGGGTCT 538491 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || ||||| |||||||| ||||| || || || Sbjct 538492 GACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAG 538551 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||| ||||| || ||| |||||| || ||| |||||| Sbjct 538552 CAGCGATTGATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACTCTCAGCGACTACAAC 538611 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || || || | || | || ||||| Sbjct 538612 ATACAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGTGGAGG 538658 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| | || | || || || || Sbjct 537976 ATGCAAATCTTCGTCAAGACGCTGACCGGAAAGACGATTACCTTGGAGGTTGAGGGATCC 538035 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || ||||| |||||||| ||||| || || || Sbjct 538036 GACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAG 538095 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||| ||| | |||||| |||||| | || |||||| Sbjct 538096 CAGCGATTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGAGTGACTACAAC 538155 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||| || ||| | || || || | || | || ||||| Sbjct 538156 ATCCAAAAAGAGTCAACCCTCCACTTGGTCCTCCGTCTCCGTGGAGG 538202 >seq988 Length=203328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | || ||||||||| |||| || || || ||| || || Sbjct 72451 ATGCAGATTTTCGTCAAAACCCTCACGGGTAAAACGATCACCCTCGAGGTCGAAGCCTCC 72392 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || |||||||||||||| || || || || || || Sbjct 72391 GACACCATCGAAAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCTGACCAG 72332 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||||| || || ||||| || Sbjct 72331 CAACGTCTCATCTTCGCCGGTAA 72309 >seq1117 Length=604131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || |||| ||||| || ||| | Sbjct 393663 ATGCAGATCTTCGTCAAGACTCTTACGGGCAAGACCATCACACTTGAGGTCGAAGGTTCT 393722 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| ||||| || ||||||||||| || || || ||||| Sbjct 393723 GACTCAATTGAGAACGTCAAGGCCAAAATCCAGGACAAGGAGGGAATCCCTCCTGATCAG 393782 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | ||||| ||| || || ||| |||||| Sbjct 393783 CAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTACAAC 393842 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 393843 ATCCAGAAGGAGTCCACCCTTCAT 393866 >seq1347 Length=405773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | || ||||||||| |||| || || |||||| || | Sbjct 393269 ATGCAGATTTTCGTCAAAACCCTGACGGGTAAAACGATCACCCTCGAGGTGGAAGCCTCG 393210 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || ||||| ||||||||||| || || ||||| ||| Sbjct 393209 GACTCGATCGAGAATGTTAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAA 393150 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| || || || ||||| || Sbjct 393149 CAACGACTGATCTTCGCCGGTAA 393127 >seq893 Length=1694367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195 ||||||||||| | | ||||| ||| |||||||||| |||| ||||||||| ||| Sbjct 1630221 TGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTCAATCGAC 1630280 Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCAT 129236 || |||||||| | || ||||| || | ||| |||||||| Sbjct 1630281 TCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCAT 1630321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720009690530