Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1419 120 3e-22 seq1526 116 3e-21 seq988 105 6e-18 seq1101 87.8 2e-12 >seq1419 Length=601844 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||| | ||||| |||||||| || || ||| Sbjct 539131 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTGCCA 539072 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || || ||||| || ||||| ||||| ||||| ||| Sbjct 539071 GCGAAGATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTC 539012 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | ||||| |||| ||| | ||| || ||||||||||| Sbjct 539011 ACGTTCTCAATGGTGTCAGATCCCTCGACCTCCAGGGTGATCGTCTTTCCGGTCAGAGTC 538952 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 538951 TTCACGAAGATCTGCATGCCT 538931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || || || || |||||||| ||||| | ||||| ||||| Sbjct 537957 AACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTC 537898 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || || ||| |||| | ||||| || || ||||||||||| || ||||| Sbjct 537897 AAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTG 537838 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||| | ||||||| | || || || | ||| | || || Sbjct 537837 GATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACCTCAAGGGTAATGGTCTT 537778 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || ||||| || || || || |||||| Sbjct 537777 CCCCGTGAGAGTCTTGACGAAGATTTGCATG 537747 >seq1526 Length=386723 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || ||||| || || |||||||| ||| Sbjct 246308 ATTCCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCG 246367 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||||| ||||| ||||| || |||||| |||| || ||||| ||||| ||| Sbjct 246368 CTGAGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGA 246427 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | || | |||||| | | ||| Sbjct 246428 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCG 246487 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | ||| || ||||||||||| || || || || |||||| || Sbjct 246488 ACTTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTGCATGCCT 246541 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | || | ||| | ||| ||||| || || |||||||| ||||| Sbjct 246083 CCACCACGGAGACGGAGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTG 246142 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| | || ||||| || || |||||| ||||||||||||| ||||| ||||| Sbjct 246143 AGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 246202 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| ||||| ||||| || | | || | ||||| | | ||||| Sbjct 246203 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACT 246262 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || ||||||||||| || || || |||||||| Sbjct 246263 TCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 246309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| || |||| |||||||| ||||| ||||| || ||||| ||||| |||||| Sbjct 247468 TTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGAATCTTG 247527 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | || | ||||| | | ||||| |||| ||| | ||| || |||||| Sbjct 247528 GCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTC 247587 Query 114360 AGAGTTTTTACAAAAATCTGCATG 114383 |||||||| || || || |||||| Sbjct 247588 AGAGTTTTCACGAAGATTTGCATG 247611 >seq988 Length=203328 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| ||| |||||||||| || ||||| ||||| || ||||| ||||| |||||| Sbjct 72309 TTACCGGCGAAGATGAGACGTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGAATCTTG 72368 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||| | |||||||| || |||||| || | ||| | |||||| || || Sbjct 72369 GCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACCTCGAGGGTGATCGTTTTACCCGTG 72428 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || ||||||||||| Sbjct 72429 AGGGTTTTGACGAAAATCTGCAT 72451 >seq1101 Length=331277 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| || |||| || ||||| ||||| ||||| || ||||| || || ||||| Sbjct 90959 TTACCGGCAAAGATCAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTATCCTGGATCTTG 90900 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | |||| |||||||| || ||||| || | ||| | || ||||||||| Sbjct 90899 GCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCGGTC 90840 Query 114360 AGAGTTTTTACAAAAATCTGCATGGC 114385 | ||| || || |||||||||||||| Sbjct 90839 AAAGTCTTGACGAAAATCTGCATGGC 90814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420126401953944