Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq964 286 7e-72 seq893 235 1e-56 >seq964 Length=244507 Score = 286 bits (316), Expect = 7e-72 Identities = 429/606 (71%), Gaps = 5/606 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||||||||| || || || || |||||||| ||||| | | | |||| Sbjct 34367 CTGGCGTTCTTCGCCGCTTCGGATGGAATTGTCAATGAAAACCTCGTCGAGCGCTTCACC 34308 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||| || || || | || ||| ||| |||||||||| || ||||| | Sbjct 34307 CAGGAGGTCAAGATGCCCGAAGCACTCTCCTTTTACAGCTTCCAGATGGCGGTAGAGGGC 34248 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| ||||| || || | | ||| || | || ||| ||||| Sbjct 34247 ATCCACTCCGAGATGTACTCCAAAATGATCGAAGCTTACGTCATCGACCCCAAAGAGCGC 34188 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 ||| ||| ||||| ||| || | | | |||||||||||||||||||| || |||||| Sbjct 34187 AACATGCTCTTCAACGCCCTGCAAGAGTTCCCCTGCATCAAGAAGAAGGCCGATTGGGCG 34128 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| |||||||| | | | || ||| | ||||| | | | || || |||| Sbjct 34127 CTCCGCTGGATCG-GCGACAAGAACGCTTCCTTCGGAACTCGTGTCATCGCGTTCGCCGC 34069 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || ||||| || |||||||| ||||||| ||||||||||||||||| || | Sbjct 34068 CGTTGAAGGCATTTTTTTCTCGGGTTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGTGG 34009 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 |||||| ||||||||| | ||||| || ||| | | ||||| || || || | Sbjct 34008 ACTGATGCCTGGACTCACCCACAGTAACGAGCTGATCTCCCGAGACGAAGGACTTCACCG 33949 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||| ||||| || ||| | | | || ||| ||||||||||| ||| | | Sbjct 33948 CGACTTCGCCTGTCTTATGTACAAGT---ATCTGGAGCAGAAGCCCTCGAACGAGAAGAT 33892 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | || ||| || || ||| |||||||| |||||| ||||| ||||||| || Sbjct 33891 CAATGAAATTATCCGTGAAGCGGTGAAGATCGAGCAGGAGTATCTCACCGAGTCGCTTCC 33832 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 |||| | || | ||||||||| |||||| |||| | |||||||| | ||||||||||| Sbjct 33831 CGTGGACATGATTGGCATGAACTGCGACCTGATGTCCCAGTACATCGAATACGTCGCCGA 33772 Query 43022 CCATCT 43027 |||||| Sbjct 33771 CCATCT 33766 >seq893 Length=1694367 Score = 235 bits (260), Expect = 1e-56 Identities = 673/1021 (66%), Gaps = 38/1021 (4%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA 243932 || ||| || ||||| |||||||| | ||| |||| || || || ||||| |||| Sbjct 1629995 GATGTTCAGCGACTGCGACTGGTCGATGTAGG-CGCCGCGGTCGGCCGCCATCTCCATGA 1630053 Query 243933 GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACC 243992 ||||||||| || || || | | |||||||| | | || || | || ||| | Sbjct 1630054 TGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTCCTGAAGATCCTTGGGAATGT 1630113 Query 243993 CTTCGATGTTCTGCACCGA---GCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGT 244049 | |||| || | || |||||| || ||||| || | | | || |||| Sbjct 1630114 CGGCGATACCTTGGATGGATCCGCCCTTC--GA-GATGATCTCGTTCTTGAGCTTGTCGT 1630170 Query 244050 TCCACAGGCCCAAGCGCT-CCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCT 244108 ||||||| || || | |||| | | | ||| || || || | |||||| || Sbjct 1630171 CCCACAGGTTCA-GCTCAACCAGATCTTTCAGCAGATGAGGATTGACGATCTGAAAGTCA 1630229 Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168 || || || |||||||| ||| | |||| | || |||||| || ||| ||||| Sbjct 1630230 CCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTCAATCGACTCGTTGTTG 1630289 Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228 || || ||||| || ||| ||| || ||||| || | ||||| |||||||| | |||| Sbjct 1630290 CCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCAGAAGACTGTTGCGCACG 1630349 Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCG 244288 |||||| | || | | | || |||||| ||| ||| | | || || Sbjct 1630350 CCGTGCTTGGCAATCTTCTCCTTCAACACGGCCCAGTCGCACTGATCCGTGGGCACCACG 1630409 Query 244289 CGTTTGAGGCC---------CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTG 244339 | ||| | | |||||| || |||| || | || || || || Sbjct 1630410 GGCTTGCCGTCTTCAGTCGTCCACATCTCGTACTGGAGAACGCCACGACTCACAGGCGAA 1630469 Query 244340 CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCG 244399 ||||||||||| ||| || |||| ||| ||||| | || || || | | Sbjct 1630470 CCCTCGTAGGTTTCGTATGGTCCGTACTGCTCCGCCAGTTCGCATGAAGATTCCAGAGAG 1630529 Query 244400 GCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAG 244459 |||| ||||||| |||||||| |||||||||| || ||||| | | | |||||| Sbjct 1630530 GCGTGGTAGATGACTTCGAAGATTCTCTTGTTCATATCACGGGCTTCGGGACTGGTGAAA 1630589 Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 |||| || |||||||||||| |||| || || || || ||||| || || || || | | Sbjct 1630590 GGGAAGCGCATCATCATGAAAGCGTCCGCAAGGCCTTGAACGCCAATTCCAATAGGACGG 1630649 Query 244520 TGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTG 244579 || ||| | ||||| ||| ||| | | ||||| ||||||||||||| | |||| Sbjct 1630650 TGACGCATATTGGACGTTGCGGCCTCGAGAATCGGGTAGTAGTTGCCGTCGATAATCTTG 1630709 Query 244580 TTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAG 244639 || |||||||| |||| | | || || || | |||| || || ||| || Sbjct 1630710 TTAAGGTTGCGAGTGACGACTTTGGTGA--TC-GCATGGAGCT---TCTCATAGTCGAAG 1630763 Query 244640 GGATCCTCGGCGATGGTGATCC-TCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCA 244698 | || | || ||| | || || ||| || |||| |||| |||||| Sbjct 1630764 G--TC--------TTGTCCTCCTTGACGAAGCGGTTCAGCGCGATCGAAGCCAAGTTGCA 1630813 Query 244699 GACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTT 244758 ||||| || || |||| | |||||| || ||||||||||| |||||| |||||| Sbjct 1630814 CACGGCGACTTCTTCCGGCGACGAGTACTGAACGATCTCGGTGCACAGGTTAGAGCACTT 1630873 Query 244759 GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAA 244818 |||||| ||||||| ||| || || |||||| ||||||||||||||||||||||||| | Sbjct 1630874 GATGGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTA 1630933 Query 244819 GGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGA 244877 || || || |||| ||| | | || | | || | |||||| | | |||||||| Sbjct 1630934 AGGAGTTCCAGTTTCGATCTGCGAGGTGACAATCTCT-TCCCAGAGAGCACGAGCCTTGA 1630992 Query 244878 C 244878 | Sbjct 1630993 C 1630993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944320761777120