Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_009232.2 Length=42572 Score E Sequences producing significant alignments: (Bits) Value seq31 630 2e-176 >seq31 Length=5916 Score = 630 bits (698), Expect = 2e-176 Identities = 875/1214 (72%), Gaps = 25/1214 (2%) Strand=Plus/Minus Query 24804 CGCGCGGCAACGACCTCATCCAGCGTGTCTTTAGCGACTATGTGGTAGAGGAACACCGGT 24863 || ||||| | || || ||||||||| | || || || |||| | ||||||||| Sbjct 4563 CGGGCGGCCAGCACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGG 4504 Query 24864 CGCTCGTGGCCCGCCTGTTTCTGGCGTACTGGACCTATACGCTCAACAACCTGCAAATAG 24923 ||| ||| || ||||| ||||||| || ||||| |||||||| || | |||| ||| Sbjct 4503 CGCGGGTGACCGGCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAG 4444 Query 24924 TGCTCCAGGTTCCA-GCCTTGCGAAATAAACGCCAGATGATGCCCGCCGTCCTGTAAATT 24982 ||||| | |||||| | | || || ||| ||||| || |||||||| ||||| | || Sbjct 4443 TGCTCAAAGTTCCATGTGTCGCTGAA-AAATGCCAGGTGGTGCCCGCCATCCTGCATGTT 4385 Query 24983 CAAGCCATGCCCGGCTGACGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCA 25042 | ||| || || || ||||| ||||| |||||||| || ||||| | || |||||| Sbjct 4384 GAGGCCGTGGCCCGCGGACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCA 4325 Query 25043 AGATTCCATCTGCTTATTACCCTTAGCACCTTTCGCAAACGCCTGTGCCTGGGGGAATCG 25102 || | ||| ||||| ||| || || ||| |||| ||||| ||||| || Sbjct 4324 GCGCTCAACCTGGCGGTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCG 4265 Query 25103 CCTAAGAATGCGCTCCAGTTCGTGTTTGAACTGATAGGCCACCAACAACGGCGCACCCTG 25162 | | |||||| |||| ||||| ||| |||||||||||||||||| ||| || || Sbjct 4264 TTTCAAGATGCGCGCCAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGA 4205 Query 25163 TAACTCCTCAACAATCGACTCGAGCGCATCCAGTTTCGTATCGTGCACTTTCTCCCAGTC 25222 ||||| || | ||||||||| || || ||||| |||| |||||||| ||| |||| || Sbjct 4204 CAACTCGTCGATAATCGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC 4145 Query 25223 TTTGGTAG---CTTCTCCGTCTGGCCCCGATACATACACGGCGCCTGATGCAATCTGCAA 25279 ||||| || |||||| || | |||||||| || || || ||||||| Sbjct 4144 ---GGTAGACCGCTCGCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAG 4088 Query 25280 ACACTTCGACGTCTTCGCCGCGGCGTTAGCCGCTTCAACTTCCCCACTCTCCAGTTCTGC 25339 || || | || ||||| ||||| |||||||| || || || || |||||||| || Sbjct 4087 GCATTTGGCGGTACGGGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGC 4028 Query 25340 GAATAACTTCTCCTCCATATCGATGTACGCCTGACGTGCTTTCTTCGGCAGGTCAATTTC 25399 ||||| || |||||||| || ||||||||| || || || |||| || | | Sbjct 4027 GAATAGCTGTTCCTCCATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGAC 3968 Query 25400 AACCGGCACAATAACGGGCGCTTCACAACCGAACCACTCGGCAGCATCAATGGTAAGGCT 25459 ||||| || | || ||| ||||| || || ||||||| || || | ||| || || Sbjct 3967 GACCGGGACGACGACAGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACT 3908 Query 25460 GATATCCTTCATCTTCTGGTGAATCTCGTTATCCGCGCCGGGGCGAGCATGGTACTCCCG 25519 || || |||| |||||||| |||||| | || || ||| |||| | ||| || || Sbjct 3907 GACGTCTTTCAGTTTCTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGTATTCGCG 3848 Query 25520 CGCCATCGCA--GATTTGCCTTTCTGTACCGAGTTAAACCATCTATCGGTAAAGGCCGTG 25577 | | || | ||| | |||||||| |||||| | ||||| | |||||| || || ||| Sbjct 3847 -GGCGGCGTAATGATCT-CCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTG 3790 Query 25578 TATGAAGACCCAAGGCGTTCACCCGCGTCGATGAACCAGTTCTGACCCCACAAGTCTTTG 25637 || || || || || || || || |||| |||||||||||||||||||| |||||| Sbjct 3789 TAAGAGCTGCCGAGACGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTG 3730 Query 25638 AGGCCGTTCGGCGACGGTGTACCGGTCAGGTTAATGAAACGCTTAACCTTGCCGAACGCC 25697 ||||||||||| || || ||||||||||| || || || ||||| ||||| |||||||| Sbjct 3729 AGGCCGTTCGGTGATGGCGTACCGGTCAGATTGATAAAGCGCTTCACCTTACCGAACGCT 3670 Query 25698 ACTTTACTAAGCGCCTTCGCTCTCTTGCTGCCGCCGGAACGGCTACGGAATGATTTAAGC 25757 |||||||| || | |||||| | |||||| |||||||| ||| ||||| ||||||||| Sbjct 3669 ACTTTACTGAGTGTCTTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTAAGC 3610 Query 25758 TTCGTGCTTTCATCGGCGACAATAACCGTAAAAGGCCAGTCGTCCTTGCCGTAGTAGTCA 25817 ||||| || ||||| ||||| || || || ||||| |||| |||||| ||| | Sbjct 3609 TTCGTCGACTCGTCGGCAACAATGACGGTGAATGGCCACGCGTC---GCCGTAATAGCCG 3553 Query 25818 ATAAGCCACTCGATAACTTCGTAGTTAGTGCACACCACGTT---AGCGTCTGACTCAAGC 25874 | | ||| ||||| || || |||||| |||||||||||| | |||| | ||| Sbjct 3552 ACCAACCAGTCGATCACCTCATAGTTAACGCACACCACGTTGAAATCGTC---GTTCAGC 3496 Query 25875 GCCGCGATACGG--CGCTTTTCTGAACCGGTTGCATCGACGACGCGCAGACACGGGAAGT 25932 ||||| | ||| || | | || ||||| | || ||||||||||| || ||||| | Sbjct 3495 GCCGCCAGGCGGTCGGCCTCTTTG--CCGGTGCCGTCCACGACGCGCAGGCATGGGAAAT 3438 Query 25933 TCCAACGCGCCTGTTCCGCCGGCCACGTACCCGACGCGACGCGCAACGGGGCGAGGATTA 25992 ||| | ||||||| |||||||| || || || || ||||||| ||| || ||||| | Sbjct 3437 CCCACTTCACCTGTTCGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAA 3378 Query 25993 ACACTCGGTCGTCG 26006 ||| || ||| || Sbjct 3377 GCACCCGATCGCCG 3364 Score = 396 bits (438), Expect = 7e-106 Identities = 700/1016 (69%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 30471 TAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAATGTTCGC 30530 || ||||||||||||||||| |||||||| || ||||| || ||||| |||| || || Sbjct 1184 TAGTACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGT 1125 Query 30531 TTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCTAACAGC 30590 || || |||||||| |||||||| || |||||||| | || || |||| | |||| Sbjct 1124 TTAGCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTCGCGCGACAGGCCGAGCAGC 1065 Query 30591 AACGGCGCGTATTTCGTCGATGCAGTGGATGCAGCCCCGAGACGCATCTCAATAATAGTA 30650 | ||| |||||||| |||||||| ||||| || || || || ||||| || || | Sbjct 1064 AGCGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCG 1005 Query 30651 CGCGCATCATCAGGTAAATCCTCATCAGCCAGCAAGTCGTTTAGTGTTGACTTCTGTGCG 30710 ||||| || || || | || || ||||||| ||||||||| || || ||||| ||| Sbjct 1004 CGCGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCG 945 Query 30711 TTGTGAATGCGGTGCGCCGGCGCCAGTTCCTGTAAAATAGGCAAGAAGTCTTTACCGGTT 30770 || | || |||||||||||||| || | | | |||| |||| ||||| Sbjct 944 TTCGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTC 885 Query 30771 AGTGAACCGCCGTATTTGCGTTG--GGCTTCTTCCTGTAGCTCTTCCTTGTGGCGCGTCA 30828 || | |||||| | | ||| ||| || |||| ||||||| |||||||||||||| Sbjct 884 AGGCCGCTGCCGTACT--CCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCGTCA 827 Query 30829 CTGCTTCAATCGCGGCCTCAGCGAGGGCAACGTCAACCTTAAATCCGCGGTCGTTAATTA 30888 | || || ||||| |||| || | | | ||||| || || ||||||||||| || | Sbjct 826 CGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGATCA 767 Query 30889 CTTGGTCTAACCACAGCACGCGGTCTTCGAACTCAGAATTCCCCCACTTCGGCATTTTCT 30948 ||||| | ||| | || || ||| | || ||||| |||| || | Sbjct 766 GCTGGTCAAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGGT 707 Query 30949 TATACACTTCACGCATAGACGTAATGTCGCTTTTTGCGTATGCAATAAATTCTGCCCACT 31008 |||||| || ||||| ||| |||||||| ||||| || |||| ||||||| Sbjct 706 AATACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCACT 647 Query 31009 CTTTTGGGTGGGTAGCGGCAGTGTAGCGTCGAATCTTATAGTTCTTAGGCGTAGGCTTAC 31068 | | ||||| |||||||| |||||||| || | ||| || ||||||||||||||||| Sbjct 646 CGTCGGGGTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTAC 587 Query 31069 TAAATCGCTGTATAAGCGCCTTACCGCGTTTATCCTTAGCCATGCTG-GCATCAATGTTC 31127 || || | || |||||||| || || ||||| | | | ||| |||| | | Sbjct 586 AGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTT-GGCGTTCTGCTCATCGACGCCT 528 Query 31128 AACACCTCACACAGCGAGGCCAGTGAGCCAGGGAGGGCGTGGCGGAACGCAACTATCATA 31187 | ||| || || | |||| || || || |||||||||||||| | ||||| Sbjct 527 AGCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCATG 468 Query 31188 GTGTCGATGATGTTTTCTACGAGAAGCTCGAACCCCCAGCAATGCTTAATAACGAGGCGG 31247 ||||| ||| || | | | ||| | |||||||| | || | || ||| Sbjct 467 GTGTCTTCGATATTGGCCGGCGGGATATCGTAGCCCCAGCATTCTCGCATCAGCAGCCGG 408 Query 31248 TCGAACATAAGGAAGTTTTGGCCTACCAGTTTGAGATTGCTGTCTGGTTTTTGCAGCTTC 31307 ||||||| ||| ||| || ||||||| | | | | || || | ||| | Sbjct 407 TCGAACAGCAGGCCGTTCTGCATTACCAGTCGGCTTTCGGTATCGGGCCTCGCCAGTTCG 348 Query 31308 AGCATCGCCCGACGCAAATCACGCGGCATATCGCTGCCGTCGGTGGCGTCCCATACTTGC 31367 ||| ||| || || || |||||||| |||||||||||||||||||||||| ||| Sbjct 347 CGCAGCGCACGTTTCAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCCATACCTGC 288 Query 31368 ACAGGCCCCTCATCGAAAGCATAAGTGCAGATAACAATTTCGGTAGTTGGATGCTCAGCG 31427 || | || ||||| || || ||||||| | |||||||||| | | || || || Sbjct 287 ACCTTTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGTGTTCCGCA 228 Query 31428 TAGGCATAGGAACCGACTTTTTTCAAATCGGCTTCTGAGAATGTTTCAGTATCGAG 31483 || ||||||| ||| ||||||||| |||||||| || | || || |||||||| Sbjct 227 TACGCATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGAATACGTCTCGGTATCGAG 172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 135/190 (71%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 27427 TATAATAGTGTTCTATTAATTTATCAACCTG---TTTGAACGACCCGACGACAAAAACAT 27483 ||||||||| | | |||| | |||||||| |||| |||||| ||| |||| Sbjct 2754 TATAATAGTTTGCGATTAGGCTGTCAACCTGCGATTTGCTG---CCGACGGTAAACACAT 2698 Query 27484 TCGCGCCACGTTTTCGGAATCTCTCATGTTCCCGTAGCTGGTGTGGGTCTGGCTTCGTGT 27543 | ||||| || ||| | | | || || || ||| |||||| ||||||| ||| Sbjct 2697 TGGCGCCGCGCTTTTGCATGCGTTCGTGCTCGCGTGCCTGGTGCGGGTCTGTGCCGGTGG 2638 Query 27544 TTTCGTCTTTCTTAACCTCGACAAACCAGATGACGCCGCGTGGGAGAATTACCAGCAGGT 27603 ||||||||||| |||||||| ||||| | |||||| | || |||| |||||||| | Sbjct 2637 CCTCGTCTTTCTTCACCTCGACGAACCACACGACGCCTCTCGGCAGAAGCACCAGCAGAT 2578 Query 27604 CTGGGGCGCC 27613 | ||||| || Sbjct 2577 C-GGGGCACC 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136106275351896