Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq893 98.7 1e-15 seq887 84.2 3e-11 >seq893 Length=1694367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 614/982 (63%), Gaps = 39/982 (4%) Strand=Plus/Plus Query 113699 TGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG 113758 || || || |||||| || || || || |||||||| || || | |||||| | Sbjct 1630008 TGCGACTGGTCGATGTAGGCGCCGCGGTCGGCCGCCATCTCCATGATGTCCTTCTGCGAA 1630067 Query 113759 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 113818 |||||||| || || |||| | || || || ||| | || || || ||||| |||| Sbjct 1630068 ATTTCCCAAACTGTCTTGTACAAGTCCTGAAGATCCTTGGGAATGTCGGCGATACCTTGG 1630127 Query 113819 ATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA---CCAGAGACCAATC 113875 ||||| || ||| | || ||| || ||| | ||| ||| || | | Sbjct 1630128 ATGGATCCGCCCTTCGAGA---TGATCTCGTTCTTGAGCTTGTCGTCCCACAGGTTCAGC 1630184 Query 113876 TTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGT 113935 | ||||| | || ||||| |||||| | ||| ||||| | |||| ||| Sbjct 1630185 TCAACCAGATCTTTCAGCAGATGAGGATTGACGATCTGAAAGTCACCGGAGAGGACGCGG 1630244 Query 113936 CTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCG 113995 | || || |||| ||||| ||||||| |||| ||||| || | ||| || ||| Sbjct 1630245 CGACTGTAAATGTTGGAGGTGTACGGCTCAATCGACTCGTTGTTGCCGAGGATCTGAGCG 1630304 Query 113996 GTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG 114055 ||||| ||||||||||| ||||| | ||||| ||||| || | || | | ||| Sbjct 1630305 GTGGACGCTGTGGGCATCGGTGCGACCAGAAGACTGTTGCGCACGCCGTGCTTGGCAATC 1630364 Query 114056 CGTTCCTTGAGGGCGTCCCAGTCGTAGT------TGAGC--------TTTGTC----TCC 114097 ||||| | || |||||||| | | || || ||| | || Sbjct 1630365 TTCTCCTTCAACACGGCCCAGTCGCACTGATCCGTGGGCACCACGGGCTTGCCGTCTTCA 1630424 Query 114098 CCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCG 114157 | |||||| || ||||||| | || | | ||||| ||||| | || ||| Sbjct 1630425 GTCGTCCACATCTCGTACTGGAGAACGCCACGACTCACAGGCGAACCCTCGTAGGTTTCG 1630484 Query 114158 TATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTC 114217 ||||| || | |||||||| |||| | | || || | ||||| || || Sbjct 1630485 TATGGTCCGTACTGCTCCGCCAGTTCGCATGAAGATTCCAGAGAGGCGTGGTAGATGACT 1630544 Query 114218 TCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACA 114275 || || || | ||||| | ||| ||| ||| | || | || || || Sbjct 1630545 TCGAAGATTCTCTTGTTCATATCACGGGCTTCG--GGACTGGTGAAAGGGAAGCGCATCA 1630602 Query 114276 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 114335 || || | ||||| || ||||| || || | ||||| || || || | |||||| | Sbjct 1630603 TCATGAAAGCGTCCGCAAGGCCTTGAACGCCAATTCCAATAGGACGGTGACGCATATTGG 1630662 Query 114336 ACTTTCGAGCGGTCTCCA----CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 114391 || || |||| ||| | |||| || | || | ||||||| | | || || || Sbjct 1630663 ACGTT---GCGGCCTCGAGAATCGGG-TAGTAGTTGCCGTCGATAATCTTGTTAAGGTTG 1630718 Query 114392 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 114451 ||||| || || ||||| |||| ||||| || || || || | | || || Sbjct 1630719 CGAGTGACGACTTTGGTGATCGCATGGAGCTTCTCATAGTCGAA---GGTCTTGTCCTCC 1630775 Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 ||||| | || ||||| || |||| || ||||| | | || ||| Sbjct 1630776 TTGACGAAGCGGTTCAGCGCGATCGAAGCCAAGTTGCACACGGCGACTTCTTCCGGCGAC 1630835 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 | ||||| | || || || |||| || || | ||| ||||| |||| ||||| || Sbjct 1630836 GAGTACTGAACGATCTCGGTGCACAGGTTAGAGCACTTGATGGTTCCCAGGTTCTGCTGG 1630895 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||| ||| || || |||||||| |||||||| || || || || || | || Sbjct 1630896 TTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGAGTTCCAGTTTCGATCTGC 1630955 Query 114632 GACTTGAGAATAGCCTTCCAGA 114653 || ||| ||| | | ||||| Sbjct 1630956 GAGGTGACAATCTCTTCCCAGA 1630977 >seq887 Length=33483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 11020 ||||||||||| |||||||| ||||| | ||| || || ||| | | |||| || Sbjct 22783 CCGACGGCGTCGATTTCATCAATGAACAGGATGCAGGGCGAATTCTTTCTGGCAGTGGCA 22724 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080 || || || ||||| | | ||| || || |||||||| |||| || | || || Sbjct 22723 AACATGTCGCGGACACGGGCCGGACCTACGCCGACAAACATCTCCAAGAATTCGGATCCG 22664 Query 11081 -GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11139 ||| | |||||| || || |||| ||| || || |||| ||||||||| ||||| Sbjct 22663 CTAACGGT-GATGAAAGGCACATTGGCTTCTCCTGCCGTGGCCTTGGCGAGGAGAGTCTT 22605 Query 11140 CCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACC 11172 ||||| || || || | ||||| |||||| Sbjct 22604 ACCCGTACCTGGAGGACCGGTGAGAATGGCACC 22572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341936670960