Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1526 127 2e-24 seq1419 109 5e-19 seq1101 98.7 1e-15 seq1117 96.9 3e-15 seq652 95.1 1e-14 seq893 84.2 2e-11 >seq1526 Length=386723 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| ||||| || || |||||||| || || || | |||| Sbjct 246098 AGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCC 246157 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | ||||| ||||||||||||||||| |||||||| || || Sbjct 246158 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCC 246217 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || || || ||||||| || | |||| Sbjct 246218 TGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTC 246277 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||| ||| || ||||| || |||||| Sbjct 246278 TTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 246310 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| || || |||||||| || || ||| || ||||| Sbjct 246326 AGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCT 246385 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||| || | || || ||||||||||| ||||| |||||||| || || Sbjct 246386 TCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 246445 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || || || ||||| | || | ||| Sbjct 246446 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACTTCCAGGGTGATCGTC 246505 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| ||| || ||||| |||||||| Sbjct 246506 TTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 246537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | || || ||||||||||||||||| |||||||| || || || || || Sbjct 247467 CTTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGAATCTT 247526 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || ||| | || || || || ||||| | || | ||||| ||||| Sbjct 247527 GGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCCAGGGTGATCGTCTTTCCGGT 247586 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTTA 64447 || |||||| ||||| |||||||| ||| Sbjct 247587 CAGAGTTTTCACGAAGATTTGCATGTTA 247614 >seq1419 Length=601844 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| || || || |||||||| || || ||| || |||| Sbjct 539147 AAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTC 539088 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||| || | || || |||||||| |||||||| |||||||| || || Sbjct 539087 TTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTC 539028 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| || ||| | || ||| | || || || | || | | Sbjct 539027 CTGGA-TCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGACCTCCAGGGTGATCG 538969 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||||||| ||| || ||||| || ||||| Sbjct 538968 TCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 538935 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || ||||| | || || || || || |||||||| || | Sbjct 537974 CCTCCGCGAAGACGAAGAACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 537915 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||||||||||||||| ||||| | || | |||||||| ||||||||| Sbjct 537914 AGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGA 537855 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | || || || || || Sbjct 537854 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACC 537795 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | ||| || ||||| |||||||| Sbjct 537794 TCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTGACGAAGATTTGCAT 537748 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| |||||||| |||||||| || || ||| | |||| || || |||||||| Sbjct 538400 GTCGACTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCGAGTTGCTTGCCA 538341 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||||||||||||||||||||| || || || || || ||| Sbjct 538340 GCGAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTC 538281 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || ||| | || || || | || | ||||| || |||| ||| Sbjct 538280 ACGTTCTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTCTTTCCTGTCAGAGTC 538221 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 538220 TTCACGAAGATCTGCAT 538204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || || ||||| | ||||| | |||||||||| Sbjct 538628 GTCGACTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCCAACTGCTTGCCG 538569 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||||||||| || ||||| || || || ||||| || || ||| Sbjct 538568 GCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTC 538509 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || ||| | || || || | ||| | ||||| || |||| ||| Sbjct 538508 ACGTTCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTTCCTGTCAGAGTC 538449 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 538448 TTCACGAAGATCTGCAT 538432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||| |||||||| || | ||||| | || || |||||||||||| Sbjct 538172 GTTGACTCTTTTTGGATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGCTGCTTGCCG 538113 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||||||||| || ||||| || || || ||||| || || ||| Sbjct 538112 GCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTC 538053 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || | || | ||||| ||||||| || Sbjct 538052 ACGTTCTCGATGGTGTCGGATCCCTCAACCTCCAAGGTAATCGTCTTTCCGGTCAGCGTC 537993 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| ||||||||| Sbjct 537992 TTGACGAAGATTTGCATT 537975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | || || |||||||||||||||||||||||||| || || || || || Sbjct 538803 CTTACCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTT 538744 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || ||| | || ||| | || || || | ||| | ||||| ||||| Sbjct 538743 GGCCTTCACGTTCTCGATGGTGTCAGATCCCTCAACCTCAAGAGTAATCGTCTTTCCGGT 538684 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || ||||| || ||||| Sbjct 538683 CAGAGTCTTCACGAAGATCTGCAT 538660 >seq1101 Length=331277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | || || ||||||||||| ||||| |||||||| || || || || || Sbjct 90960 CTTACCGGCAAAGATCAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTATCCTGGATCTT 90901 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || || ||| || || || | || | |||||||||||| Sbjct 90900 GGCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCGGT 90841 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || |||||||| ||||| Sbjct 90840 CAAAGTCTTGACGAAAATCTGCAT 90817 >seq1117 Length=604131 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || || || |||||||| || || || || |||| Sbjct 393875 AAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTC 393816 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | || || |||||||| || ||||| ||||| || || || Sbjct 393815 CTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTC 393756 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| || ||| | || ||| | || || || | || | ||| Sbjct 393755 CTGGATTTTGGCCTTGACGTTCTCAATTGAGTCAGAACCTTCGACCTCAAGTGTGATGGT 393696 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || ||||| || ||||| Sbjct 393695 CTTGCCCGTAAGAGTCTTGACGAAGATCTGCAT 393663 >seq652 Length=32697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || || |||||| | || Sbjct 7101 AGAACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCGTTGAGGGTGCGGCCATCC 7042 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| |||| || |||||||| || || ||||| || || || ||| Sbjct 7041 TCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCT 6982 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATC--ACCGGCGTCCACTTCTACAGTTACGG 64409 || || || ||| || ||| | | ||| ||| | || ||||| | ||| | | Sbjct 6981 TGAATCTTGGCCTTAACGTTCTCGATCGAATCGGACC--CTTCGACTTCCAAAGTAATCG 6924 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || || | || || || || || |||||| Sbjct 6923 TCTTTCCAGTAAGGGTCTTCACAAAGATCTGCATT 6889 >seq893 Length=1694367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTAC-TGTATTGCACAATTTCTGCGCA 154645 || ||||||||||| ||||| | |||||| | | || ||| || || || || | ||| Sbjct 1630800 GAAGCCAAGTTGCACACGGCGACTTCTTCCG-GCGACGAGTACTGAACGATCTCGGTGCA 1630858 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || ||| ||| ||||| |||||||| | ||| ||||| ||| |||||| ||||| Sbjct 1630859 CAGGTTAGAGCACTTGATGGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTC 1630918 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||||| | ||||| || || || ||||| Sbjct 1630919 CTTGTAGAGCATGTAAGGAGTTCCAGTTTC 1630948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635044435280