Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq893 125 7e-24 >seq893 Length=1694367 Score = 125 bits (138), Expect = 7e-24 Identities = 188/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || ||||| |||||||| || ||| ||| |||||| |||||| ||||| ||||| Sbjct 1631628 CCTACCCTCTTCAACGCCGGAACCTGCAAGCCCCAGATGAGTTCGTGCTTCCTCCTGACG 1631569 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC--ATCT 94015 | | | |||||||||| ||| || ||| | | ||| | | ||||| || |||| Sbjct 1631568 ATGCACGACGACTCCATCGACGGCATCTTCAAGACCCTGTGGCA--GTGCGCCCTGATCT 1631511 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || | ||| || || ||||| | | | ||| | | |||||| ||| | | Sbjct 1631510 CTAAGTCCGCCGGAGGCATCGGACTTAACGCTCACTGCATCCGTGCCTCGGGAACGATGA 1631451 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 || |||||||| |||||||||||||| || |||| |||||||| || | ||||||| Sbjct 1631450 TCGCAGGTACCAACGGCACCTCCAACGGTCTGATCCCCATGCTCCGTGTGTACAACAACA 1631391 Query 94136 CGGCGCGCTACGTGGACCAGGGTGG 94160 |||| |||||||| || ||||| || Sbjct 1631390 CGGCTCGCTACGTTGATCAGGGAGG 1631366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| ||||| ||| ||| || || || || || |||||||| || ||||| || || Sbjct 1630358 CAAGCACGGCGTGCGCAACAGTCTTCTGGTCGCACCGATGCCCACAGCGTCCACCGCTCA 1630299 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| ||||||||||||||| | || || | |||||||||| | |||| | || || Sbjct 1630298 GATCCTCGGCAACAACGAGTCGATTGAGCCGTACACCTCCAACATTTACAGTCGCCGCGT 1630239 Query 95193 GCTCGCCGGGGAATT 95207 ||| |||| || || Sbjct 1630238 CCTCTCCGGTGACTT 1630224 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 ||| | || || || || || ||||| | | ||||||| | |||| |||||| ||| Sbjct 1630954 CAGATCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAAC 1630895 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 |||||| |||| || |||||| |||| || |||||||||||||| || |||| | Sbjct 1630894 CAGCAGAACCTGGGAACCATCAAGTGCTCTAACCTGTGCACCGAGATCGTTCAGTACTCG 1630835 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 || ||||| || | || ||||| ||| ||| || ||| Sbjct 1630834 TCGCCGGAAGAAGTCGCCGTGTGCAACTTGGCTTCGATC 1630796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713540529520