Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq893 149 6e-31 seq1419 107 2e-18 seq1526 100 3e-16 seq652 89.7 5e-13 seq988 86.0 6e-12 >seq893 Length=1694367 Score = 149 bits (164), Expect = 6e-31 Identities = 305/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 154071 TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGG 154130 ||||| |||||||| |||| ||| || | |||||| | || || | |||||| ||| Sbjct 1631363 TTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATCAGA 1631422 Query 154131 CCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACG 154190 ||| | | |||||||||||| |||| | | || ||| || | || || Sbjct 1631423 CCGTTGGAGGTGCCGTTGGTACCTGCGATCATCGTTCCCGAGGCACGGATGCAGTGAGCG 1631482 Query 154191 TTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAG 154250 |||| || ||||| ||| || |||| || || ||||| | | ||| ||| || || Sbjct 1631483 TTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTGCCACAGGGTCTTGAAG 1631542 Query 154251 ATGCCGTCGATGCTATCGTCGCGGA-CGCCGAGCAAGAAACACGAACACATTTGCGGAAT 154309 |||||||||||| |||||| | | || | || | ||| ||||||| ||| || || | Sbjct 1631543 ATGCCGTCGATGGAGTCGTCGTGCATCGTC-AGGAGGAAGCACGAACTCATCTGGGGCTT 1631601 Query 154310 GCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAA-CAGTTTTTGGCTCATCA 154368 || ||||| || |||||||| || |||||||||||| ||| | | ||| | Sbjct 1631602 GCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCG-ACATGA 1631660 Query 154369 TGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCA 154428 | ||| ||||||||||| | ||||| || || ||| | || | || || |||| Sbjct 1631661 GGTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTGTGGACTCCCACGGCTACACGCA 1631720 Query 154429 TGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTT 154488 | ||||||||||||||||| |||| || | || ||||||| | || || Sbjct 1631721 TAAGCATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGACCGTT 1631780 Query 154489 CGAGGGTTTTGTAACCGAAATACTTGTA 154516 | ||||| ||| | |||||||| |||| Sbjct 1631781 CCAGGGTCTTGAACCCGAAATAGGTGTA 1631808 Score = 82.4 bits (90), Expect = 8e-11 Identities = 158/228 (69%), Gaps = 14/228 (6%) Strand=Plus/Plus Query 153843 TCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGAC 153902 |||||||| || |||||| ||| | || || || |||| || |||||||||| ||| Sbjct 1631085 TCAAACTCTTCTCCGTAGGTGTCAGGCAGTCCCGGGCACTTGTGGGGACACATCAAGGAC 1631144 Query 153903 CA---CATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 || | |||| || ||||| ||| ||||||||| || || | ||| || | || Sbjct 1631145 CATTCCTTATCATCC---TTGACACGTTCCATGAACAGGTCAGGAATCCACAGGCCATAG 1631201 Query 153960 ATGAGGTCGCGCGCCTTGCAATCCTCCGCG---CCCATGTTGCGTTTCAGATTGAGCA-C 154015 | ||||| || || || || ||| || || ||||||| ||||| || | | Sbjct 1631202 AAAAGGTCACGGGC---GCGCTCTTCCTCGGATCCGGTGTTGCGCTTCAGGCGCAGGAAC 1631258 Query 154016 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC 154063 | | |||| ||||||||||| || |||| ||||| ||| | ||||| Sbjct 1631259 TCGA-AGATATCGGCGTGCCACGGCTCAACGTAGATGGCAAACGCACC 1631305 >seq1419 Length=601844 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | ||||| ||||| |||||||||||||| Sbjct 538431 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCT 538372 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | |||||||||||| || || | |||| || ||||| ||||| ||||| Sbjct 538371 GAGGGTTCTTCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGG 538312 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 538311 AATTCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGAC 538252 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | ||| || || |||||||| || || || ||||||||| || Sbjct 538251 CTCCAGGGTAATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCATGCCT 538200 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | || | | | |||||||| || |||||||||||||| Sbjct 539162 GCCACCACGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 539103 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||| || || || || || | |||| |||||||| || || ||||| Sbjct 539102 GAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGG 539043 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | | || | |||||| | ||| || Sbjct 539042 GATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGAC 538983 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | ||| || || |||||||| || || || ||||||||| || Sbjct 538982 CTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATGCCT 538931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | ||||||| ||||| ||||||||||| || Sbjct 538203 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCACT 538144 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||||| || || |||| | |||| | ||||| ||||| || || Sbjct 538143 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGG 538084 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| || || | | || | |||||||| ||| || Sbjct 538083 AATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAAC 538024 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || ||||| || || || || || ||||| Sbjct 538023 CTCCAAGGTAATCGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 537976 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | |||||||| || |||||||||||||| Sbjct 538659 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCT 538600 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || | || || |||| | |||| | ||||| ||||| || || Sbjct 538599 GAGAGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGG 538540 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| || || | | || | |||||| | | ||| || Sbjct 538539 AATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGAC 538480 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | ||| || || |||||||| || || || ||||||||| || Sbjct 538479 CTCAAGAGTGATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCATGCCT 538428 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | |||||||| || |||||||||||||| Sbjct 537974 CCTCCGCGAAGACGAAGAACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 537915 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || || || |||| |||| | ||||| || || ||||| Sbjct 537914 AGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGA 537855 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | ||| | ||||||| | ||| ||| Sbjct 537854 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACC 537795 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || || ||||| || || || || |||||| Sbjct 537794 TCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTGACGAAGATTTGCATG 537747 >seq1526 Length=386723 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||||| | ||||| ||| |||||||| || || | Sbjct 246344 GATTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCG 246403 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 246404 AAGATAAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 246463 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | || ||| || || | || | ||| || || |||||||| || Sbjct 246464 TTCTCGATGGTGTCCGACGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTC 246523 Query 138601 ACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 246524 ACGAAGATTTGCATGCCT 246541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||||| | ||| | |||||| || || || || | Sbjct 246116 GATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCG 246175 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 246176 AAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 246235 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | ||| || || | || | || || || |||||||| || Sbjct 246236 TTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTC 246295 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 246296 ACGAAGATCTGCAT 246309 >seq652 Length=32697 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| ||||| | | |||||||| || |||||||||||| | | ||| || | Sbjct 6876 CGCAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCG 6817 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 |||||||| || || || | |||| |||||||| || || ||||| || || || ||| Sbjct 6816 TCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTG 6757 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || || | | || | | ||| | || ||||| | || | Sbjct 6756 TCCTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATG 6697 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || || || ||||| || ||||| ||||||||| || Sbjct 6696 GTCTTGCCCGTAAGAGTCTTGACAAAGATCTGCATGCCT 6658 >seq988 Length=203328 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 ||||||| |||| ||||| || ||||| ||||| || ||||| ||||| ||| | || Sbjct 72309 TTACCGGCGAAGATGAGACGTTGCTGGTCAGGAGGGATTCCTTCCTTGTCT-TGAATCTT 72367 Query 138532 TGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | | ||| | |||||||| | || ||||||| || | ||||||||| || Sbjct 72368 GGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACCTCGAGGGTGATCGTTTTACCCGT 72427 Query 138591 CAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| || ||||||||||| Sbjct 72428 GAGGGTTTTGACGAAAATCTGCAT 72451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252710476640