Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1419 111 1e-19 seq1526 102 6e-17 >seq1419 Length=601844 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || |||||||| |||||||| |||||||| |||| |||| || Sbjct 538412 ACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCG 538353 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||||||| | || | ||||| |||||| ||||||||||||||||| Sbjct 538352 AGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGG 538293 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || || || || || || || | |||||| || || Sbjct 538292 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTCTTT 538233 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||| || || || || ||||| Sbjct 538232 CCTGTCAGAGTCTTCACGAAGATCTGCAT 538204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| | || ||||| || || || || |||||||| |||| Sbjct 539163 TGCCACCACGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGC 539104 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | ||||||| | || ||||||||| | || | |||||| || ||| | Sbjct 539103 TGAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAG 539044 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||||||||| || ||| ||| || | || || || || || | Sbjct 539043 GGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGA 538984 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || |||||||| || || || || ||||| Sbjct 538983 CCTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 538935 >seq1526 Length=386723 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| ||||||||| | || |||| || | || Sbjct 246106 ATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCCTCAAGCTG 246165 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | || | |||||| |||||| || |||||||||||||| || || Sbjct 246166 CTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTT 246225 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || || | || || |||| ||| ||||| || || || Sbjct 246226 GGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTCTTTCCGGT 246285 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || || || || ||||| Sbjct 246286 CAGAGTCTTCACGAAGATCTGCAT 246309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| |||||||| | | ||||||| | ||| Sbjct 246334 ATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCGAGTTG 246393 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | || | ||||| ||||| || |||||||||||||| || || Sbjct 246394 CTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTT 246453 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || || || || || | ||| || || || || || Sbjct 246454 GGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACTTCCAGGGTGATCGTCTTTCCGGT 246513 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || || || |||||||| Sbjct 246514 CAGAGTCTTCACGAAGATTTGCAT 246537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385196373170