Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1419 109 5e-19 seq893 98.7 9e-16 seq988 82.4 7e-11 >seq1419 Length=601844 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | | || ||||||| || || ||||| ||||| || || ||| Sbjct 537977 ATTCCTCCGCGAAGACGAAGAACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG 537918 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| || || | || ||||| ||| | ||||| || ||||| || || Sbjct 537917 CTGAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGA 537858 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || || || |||| ||| | |||||||||| ||| Sbjct 537857 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCA 537798 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || || ||||| || || || |||||||| Sbjct 537797 ACCTCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTGACGAAGATTTGCAT 537748 >seq893 Length=1694367 Score = 98.7 bits (108), Expect = 9e-16 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 ||||||| ||||| || |||||||||||||| |||||||||||| | || | || ||| Sbjct 1630950 TCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGC 1630891 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 ||| ||||||| || || || ||| || ||| |||| || | | ||| || | Sbjct 1630890 AGAACCTGGGAACCATCAAGTGCTCTAACCTGTGCACCGAGATCGTTCAGTAC-TCGTCG 1630832 Query 123724 CC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTC 123776 || || |||| |||||||| || |||||||||| | ||| |||| || | |||| Sbjct 1630831 CCGGAAGAAGTCGCCGTGTGCAACTTGGCTTCGA-TCGCGCTGAACCGCTTCGTC 1630778 >seq988 Length=203328 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||||||||| || || || ||||| || |||||||| || Sbjct 72309 TTACCGGCGAAGATGAGACGTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGAATCTTG 72368 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | ||||||||| | ||||| ||||| || | |||||| || || Sbjct 72369 GCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACCTCGAGGGTGATCGTTTTACCCGTG 72428 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| ||||| Sbjct 72429 AGGGTTTTGACGAAAATCTGCAT 72451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994374637520