Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq893 89.7 6e-13 seq887 89.7 6e-13 >seq893 Length=1694367 Score = 89.7 bits (98), Expect = 6e-13 Identities = 225/341 (66%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 115660 TGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG 115719 || || || |||||| || || || || |||||||| || || | |||||| | Sbjct 1630008 TGCGACTGGTCGATGTAGGCGCCGCGGTCGGCCGCCATCTCCATGATGTCCTTCTGCGAA 1630067 Query 115720 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 115779 |||||||| || || |||| | || || || ||| | || || || ||||| |||| Sbjct 1630068 ATTTCCCAAACTGTCTTGTACAAGTCCTGAAGATCCTTGGGAATGTCGGCGATACCTTGG 1630127 Query 115780 ATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA---CCAGAGACCAATC 115836 || || || || ||| |||| || ||| | ||| ||| || | | Sbjct 1630128 ATGGATCCGCC---CTTCGAGATGATCTCGTTCTTGAGCTTGTCGTCCCACAGGTTCAGC 1630184 Query 115837 TTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGT 115896 | ||||| | || || || |||||| | ||| ||||| | |||| ||| Sbjct 1630185 TCAACCAGATCTTTCAGCAGATGAGGATTGACGATCTGAAAGTCACCGGAGAGGACGCGG 1630244 Query 115897 CTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT 115956 | || ||||||| ||||| ||||||| |||| ||||| || | ||| || || Sbjct 1630245 CGACTGTAAATGTTGGAGGTGTACGGCTCAATCGACTCGTTGTTGCCGAGGATCTGAGCG 1630304 Query 115957 GTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||||| ||||||||||| ||||| | ||||| |||||||| Sbjct 1630305 GTGGACGCTGTGGGCATCGGTGCGACCAGAAGACTGTTGCG 1630345 >seq887 Length=33483 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| ||||| |||||||| | ||| || || ||| | | |||| || Sbjct 22783 CCGACGGCGTCGATTTCATCAATGAACAGGATGCAGGGCGAATTCTTTCTGGCAGTGGCA 22724 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || || || || || | | ||| || || ||||||||||||| || | || || Sbjct 22723 AACATGTCGCGGACACGGGCCGGACCTACGCCGACAAACATCTCCAAGAATTCGGATCCG 22664 Query 12996 -GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| | |||||| || || |||| ||| || || |||| ||||||||| ||||| Sbjct 22663 CTAACGGT-GATGAAAGGCACATTGGCTTCTCCTGCCGTGGCCTTGGCGAGGAGAGTCTT 22605 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 ||||| ||||| || | ||||| |||||| Sbjct 22604 ACCCGTACCTGGAGGACCGGTGAGAATGGCACC 22572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495221271920