Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq893 120 5e-22 >seq893 Length=1694367 Score = 120 bits (132), Expect = 5e-22 Identities = 255/372 (69%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 ||| ||||| |||||||| ||||| ||||||||| | |||||| || || || |||| Sbjct 1629986 GGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTA-GGCGCCGCGGTCGGCCGCCA 1630044 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | | || ||| |||||||||||| ||||| || |||||| ||| ||| ||| | Sbjct 1630045 TCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC-CTGAAGATCC 1630103 Query 204081 GAGGCACATCTTCCCACGTCCT--GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | || | | ||| ||| || ||| | | || | |||| | || | Sbjct 1630104 TTGGGA-ATGTCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGA-TCTCGTTCTTGA 1630161 Query 204139 -CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 || || |||||| | || | | ||| || || ||| || || |||| ||||| Sbjct 1630162 GCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGATTGACGATCT 1630221 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 ||||||| ||||| || || | || || | | |||| |||| | || || | || || Sbjct 1630222 GAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTCAATCGACT 1630281 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 |||||||||||| |||||||||||| || |||||||| || || | || || || Sbjct 1630282 CGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCAGAAGACTGT 1630341 Query 204318 TGCGCACACCGT 204329 ||||||| |||| Sbjct 1630342 TGCGCACGCCGT 1630353 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 204887 ACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTG 204946 |||||||||||||||| |||| |||||| | |||| | ||||||||| |||||| Sbjct 1630845 ACGATCTCGGTGCACAGGTTAGAGCACTTGATGGTTCCCAGGTTCTGCTGGTTCGACTTG 1630904 Query 204947 CGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 ||||| |||| ||||||||| | |||| | || |||| | || ||||| || Sbjct 1630905 CGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGAGTTCCAGTTTCGATCTGCGA 1630957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795139674594720