Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1526 138 3e-27 seq1419 138 3e-27 seq652 118 2e-21 seq988 111 4e-19 seq1117 102 2e-16 >seq1526 Length=386723 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || || ||||| |||| ||||||||| | ||||||||| || Sbjct 246098 AGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCC 246157 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||||||||||||||| ||| |||||||| ||| Sbjct 246158 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCC 246217 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 246218 TGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTC 246277 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || Sbjct 246278 TTTCCGGTCAGAGTCTTCACGAAGATCTG 246306 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || |||||||| || ||||| |||| ||||||||| | || | || ||| Sbjct 246326 AGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCT 246385 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || |||||||| || ||||||||||| ||| |||||||| ||| Sbjct 246386 TCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 246445 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||||||| Sbjct 246446 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACTTCCAGGGTGATCGTC 246505 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || ||||| Sbjct 246506 TTTCCGGTCAGAGTCTTCACGAAGATTTG 246534 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| |||||||||||||| ||| |||||||| ||||||||||| Sbjct 247467 CTTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGAATCTT 247526 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| |||| ||||| | | || || |||| ||||||||||| || || Sbjct 247527 GGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCCAGGGTGATCGTCTTTCCGGT 247586 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| Sbjct 247587 CAGAGTTTTCACGAAGATTTG 247607 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| || ||||||||||| ||| |||||||| ||||| ||||| |||| Sbjct 247199 GCGAAGATAAGGCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 247258 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| ||||| | | || || |||| ||||||||||| || || ||||| Sbjct 247259 ACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTCAGAGTC 247318 Query 199613 TTCACAAAAATTTG 199626 ||||| || ||||| Sbjct 247319 TTCACGAAGATTTG 247332 >seq1419 Length=601844 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| |||||||| ||||||| ||||||||| | || ||||| || Sbjct 538415 AGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCC 538356 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || |||||||| || ||||||||||| ||| ||||||||| ||| Sbjct 538355 TCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC 538296 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | || || |||| || |||||| Sbjct 538295 TGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTC 538236 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || Sbjct 538235 TTTCCTGTCAGAGTCTTCACGAAGATCTG 538207 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || |||||||| ||||||||||| |||| ||||||||| | || Sbjct 539155 CGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTA 539096 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| || |||||||| ||||||||||| || ||| |||||| Sbjct 539095 CGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATTCCT 539036 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | |||||| | | || || |||| Sbjct 539035 TCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGACCTCCAGG 538976 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| ||||| || || || Sbjct 538975 GTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 538938 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || ||||| ||||||| |||||||||| |||||| | ||||| Sbjct 538187 AGGACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCACTCAAAGTGCGGCCATCC 538128 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| | ||||||||||| || ||| || || || Sbjct 538127 TCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCT 538068 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || ||||| || |||||| Sbjct 538067 TGGATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAACCTCCAAGGTAATCGTC 538008 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 538007 TTTCCGGTCAGCGTCTTGACGAAGATTTG 537979 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| || | ||||||||| | ||| | |||||| Sbjct 538643 AGGACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCT 538584 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||| ||||| | ||||||||||| || ||| || || || Sbjct 538583 TCCAACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCT 538524 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | || || || | ||||||||| Sbjct 538523 TGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTC 538464 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || Sbjct 538463 TTTCCTGTCAGAGTCTTCACGAAGATCTG 538435 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || | ||| |||||||| |||| ||||||||| | || Sbjct 537968 CGAAGACGAAGAACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTA 537909 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||||||||||||||| | |||||||| || ||| ||| || Sbjct 537908 CGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGAATGCCC 537849 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||||| ||||| | | || || || | Sbjct 537848 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACCTCAAGG 537789 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| || || || ||||| Sbjct 537788 GTAATGGTCTTCCCCGTGAGAGTCTTGACGAAGATTTG 537751 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| || ||||||||||| ||| ||||||||| ||||| ||||| Sbjct 538803 CTTACCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTT 538744 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| |||| |||||| | | || || || | || |||||||| || || Sbjct 538743 GGCCTTCACGTTCTCGATGGTGTCAGATCCCTCAACCTCAAGAGTAATCGTCTTTCCGGT 538684 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || Sbjct 538683 CAGAGTCTTCACGAAGATCTG 538663 >seq652 Length=32697 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| |||| ||||||||| | |||| Sbjct 6654 CGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTC 6595 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| ||||||||||| || ||| || || Sbjct 6594 CGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCC 6535 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | | ||| | ||| || || | Sbjct 6534 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGG 6475 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| ||||| || ||||| || || Sbjct 6474 GTGATGGTCTTGCCCGTAAGAGTCTTGACAAAGATCTG 6437 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||| ||||| ||||| |||| |||||||||| | |||| Sbjct 11309 CGAAGGCAAAGAACGAGACGGAAGGTCGATTCCTTCTGGATGTTGTAGTCATTGAGAGTC 11250 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||| |||||| || |||||||| ||||||||||| ||| || || Sbjct 11249 CGGCCATCCTCGAGCTACTTTCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCC 11190 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 | | ||||| |||| ||| ||| || | | ||| | ||||||| || | Sbjct 11189 TTTTTGTCCTGGGTCTTGGCCTTGACGTTCTCAATCGAGTCAGCATTTTCTACCTCAAGG 11130 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || |||||||| || || Sbjct 11129 GTGATGGTCTTTCCCGTGAGGGTCTTCACAAAGATCTG 11092 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || || |||||||| |||| ||||||||| | |||| Sbjct 6882 CGAAGGCGCAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTC 6823 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| ||||||||||| || ||| || || Sbjct 6822 CGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCC 6763 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | | ||| | ||| || || | Sbjct 6762 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGG 6703 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| ||||| || ||||| || || Sbjct 6702 GTGATGGTCTTGCCCGTAAGAGTCTTGACAAAGATCTG 6665 >seq988 Length=203328 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||||||||| |||||||| ||| |||||||| || |||||||| Sbjct 72308 CTTACCGGCGAAGATGAGACGTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGAATCTT 72367 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| ||||| |||||| | | ||| || || | |||||||| |||||||| Sbjct 72368 GGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACCTCGAGGGTGATCGTTTTACCCGT 72427 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || ||||| || Sbjct 72428 GAGGGTTTTGACGAAAATCTG 72448 >seq1117 Length=604131 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || |||||||| |||| ||||||||| | ||||| || || Sbjct 393874 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCC 393815 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| ||||||||||| || ||| ||||| || ||| Sbjct 393814 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCC 393755 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| || | | ||| | ||| || || | ||||| ||| Sbjct 393754 TGGATTTTGGCCTTGACGTTCTCAATTGAGTCAGAACCTTCGACCTCAAGTGTGATGGTC 393695 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || || || || || Sbjct 393694 TTGCCCGTAAGAGTCTTGACGAAGATCTG 393666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178898006094654