Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1419 131 2e-25 seq652 127 2e-24 seq1526 113 5e-20 seq1117 104 3e-17 >seq1419 Length=601844 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || |||||||| || |||||| ||||| ||||||||| Sbjct 537974 CCTCCGCGAAGACGAAGAACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 537915 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || |||||||| |||||||| |||||||||||||| |||| || Sbjct 537914 AGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGA 537855 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||||| | | | |||||| | || || Sbjct 537854 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACC 537795 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || ||||| || || || || ||||||||||| Sbjct 537794 TCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTGACGAAGATTTGCAT 537748 Score = 111 bits (122), Expect = 2e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| |||||||| | |||||| | || ||||||||||||||||| || Sbjct 538167 CTCTTTTTGGATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 538108 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||| || |||||| ||| | | Sbjct 538107 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTT 538048 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| || || |||| || || || || || |||||||| || Sbjct 538047 CTCGATGGTGTCG---GATCCCTCAACCTCCAAGGTAATCGTCTTTCCGGTCAGCGTCTT 537991 Query 46579 AACAAAGATTTGCATT 46594 || |||||||||||| Sbjct 537990 GACGAAGATTTGCATT 537975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| ||||||||| || || | |||| ||||| |||||||| ||||| Sbjct 538395 CTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCGAGTTGCTTGCCAGCGAA 538336 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| || | | ||||||||| |||||| ||| | | Sbjct 538335 GATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACGTT 538276 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || |||| || || || || || ||||| || || || Sbjct 538275 CTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTCTTTCCTGTCAGAGTCTTCAC 538216 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 538215 GAAGATCTGCAT 538204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||| |||||||| | || || | |||||||||||| || Sbjct 538623 CTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCCAACTGCTTGCCGGCAAA 538564 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||| || |||||| ||| | | Sbjct 538563 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTT 538504 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || || | ||||| || || || ||||| || || || Sbjct 538503 CTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTTCCTGTCAGAGTCTTCAC 538444 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 538443 GAAGATCTGCAT 538432 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || || || |||| || ||||||||||| ||||| Sbjct 539126 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAA 539067 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | | ||||||||| |||||| || | | Sbjct 539066 GATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 539007 Query 46522 CGCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| | || || || |||| ||||| || || || ||||| || || | Sbjct 539006 CTCAATGGTGTCAGATC-CCTCGACCTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCA 538948 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 538947 CGAAGATCTGCAT 538935 >seq652 Length=32697 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| |||| ||| | || |||||| ||||| ||||||||| ||||| || || Sbjct 6876 CGCAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCG 6817 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||| ||||| || | |||||||| || | || | || ||||||| Sbjct 6816 TCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTG 6757 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | || ||| ||| || || | |||||| Sbjct 6756 TCCTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATG 6697 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || |||||||| ||||| Sbjct 6696 GTCTTGCCCGTAAGAGTCTTGACAAAGATCTGCAT 6662 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| ||||| || |||| |||||||||||||| ||||| Sbjct 6625 CTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 6566 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 6565 GATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 6506 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| ||| || || | |||||||| |||||||| || || || || Sbjct 6505 CTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 6446 Query 46582 AAAGATTTGCATTTT 46596 |||||| ||||| || Sbjct 6445 AAAGATCTGCATCTT 6431 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| ||||| || | || ||||||| ||| || || || Sbjct 11279 TCCTTCTGGATGTTGTAGTCATTGAGAGTCCGGCCATCCTCGAGCTACTTTCCAGCAAAG 11220 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||||||||| || | || || |||||| | |||| ||||| || Sbjct 11219 ATGAGGCGCTGCTGGTCGGGAGGGATGCCCTTTTTGTCCTGGGTCTTGGCCTTGACGTTC 11160 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| ||| || || | |||||||| || ||||| || || || ||| Sbjct 11159 TCAATCGAGTCAGCATTTTCTACCTCAAGGGTGATGGTCTTTCCCGTGAGGGTCTTCACA 11100 Query 46583 AAGATTTGCAT-TTTGCA 46599 ||||| ||||| |||||| Sbjct 11099 AAGATCTGCATCTTTGCA 11082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || |||||| ||||| ||||||||| || ||||| | || || Sbjct 7098 ACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCGTTGAGGGTGCGGCCATCCTCA 7039 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | |||||||| || | || | || ||||||||| Sbjct 7038 AGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGA 6979 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | || ||| | ||| || |||| || || || || Sbjct 6978 ATCTTGGCCTTAACGTTCTCGATCGAATCGGACCCTTCGACTTCCAAAGTAATCGTCTTT 6919 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || |||||||| |||||| Sbjct 6918 CCAGTAAGGGTCTTCACAAAGATCTGCATT 6889 >seq1526 Length=386723 Score = 113 bits (124), Expect = 5e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| ||||| || | | ||| | |||||||| | || ||||| ||||| ||||| Sbjct 246076 TTAGTTGCCACCACGGAGACGGAGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTA 246135 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| ||||| | |||| || ||||||||||| ||||| || | ||||||||||| Sbjct 246136 GTCGCTGAGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTC 246195 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 || || | | ||||||||| |||||| ||||| || | | |||||| | Sbjct 246196 GGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGC 246255 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || | |||||||| || || ||||| || || || ||||| |||||| Sbjct 246256 CTCGACTTCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 246310 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||||||| | || ||||| ||||| ||||||||| Sbjct 246311 CCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 246370 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||| |||||||| ||||| || | |||||||||||| | || Sbjct 246371 AGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGG 246430 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| || | | ||||| || || || Sbjct 246431 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACT 246490 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || ||||| || || || ||||||||||| Sbjct 246491 TCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 246537 >seq1117 Length=604131 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| ||||| || |||| |||||||||||||| ||||| Sbjct 393854 CTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 393795 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| ||| || ||||| | Sbjct 393794 GATAAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTT 393735 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | ||| ||| || || | |||||||| |||||||| || || || || Sbjct 393734 CTCAATTGAGTCAGAACCTTCGACCTCAAGTGTGATGGTCTTGCCCGTAAGAGTCTTGAC 393675 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 393674 GAAGATCTGCAT 393663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565227363720240