Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1526 138 1e-27 seq1419 129 6e-25 seq652 125 7e-24 seq1117 118 1e-21 >seq1526 Length=386723 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || ||||||||| | || |||||||| | Sbjct 246310 AATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTAGAAGTCGAGGCTTC 246251 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || |||| ||||| || ||||| || |||||| Sbjct 246250 GGACACGATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACC 246192 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| ||||| ||||| || |||| | || |||| |||||||| Sbjct 246191 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGAAGGACTCTCAGCGACTACA 246132 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | ||||| ||| |||| || ||| Sbjct 246131 ACATCCAGAAGGAATCCACGCTCCATCTGGTCCTCCGT 246094 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || |||||| | || |||||||| | Sbjct 246537 ATGCAAATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAAGTCGAGGCGTCG 246478 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 246477 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 246419 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| || || || |||| || ||||||| ||||||||| Sbjct 246418 GCAGCGCCTTATCTTCGCTGGCAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTACAA 246359 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || ||| |||| || ||| Sbjct 246358 CATCCAGAAGGAATCCACTCTCCATCTGGTCCTCCGT 246322 >seq1419 Length=601844 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || |||||||| || ||||| ||| | || || ||||| || Sbjct 537748 ATGCAAATCTTCGTCAAGACTCTCACGGGGAAGACCATTACCCTTGAGGTTGAGGCTTCC 537807 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| ||||| ||||| ||||| |||| || Sbjct 537808 GACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 537867 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || || ||||| || |||| || ||||||| |||||||||| Sbjct 537868 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAAC 537927 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || ||||| | || || ||| Sbjct 537928 ATCCAGAAGGAGTCCACTTTGCATCTCGTTCTTCGT 537963 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || || ||| | || ||||||| | Sbjct 538204 ATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATTACCCTGGAGGTCGAGGGGTCT 538263 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || |||||||| ||||||| Sbjct 538264 GACACCATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCA 538322 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| || || || |||| | ||||||| ||||||||| Sbjct 538323 GCAGCGCCTTATCTTCGCTGGCAAGCAACTCGAGGACGGAAGAACCCTCAGCGACTACAA 538382 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| || |||| || || ||||| || ||| Sbjct 538383 CATCCAAAAAGAGTCGACCCTCCACTTGGTCCTCCGT 538419 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || |||||| | || ||||||| | Sbjct 538935 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAGGTCGAGGGATCT 538994 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || ||||| || |||| || Sbjct 538995 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGATCA 539053 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| || ||||||| ||||||||| Sbjct 539054 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAA 539113 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || | || || ||| Sbjct 539114 CATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGT 539150 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || ||||| | || ||||||| | Sbjct 538432 ATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATCACTCTTGAGGTCGAGGGGTCT 538491 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| |||||| | ||||| Sbjct 538492 GACACCATCGAGAACG-TGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCA 538550 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||| |||| || | ||||| |||| ||||||||| Sbjct 538551 GCAGCGATTGATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACTCTCAGCGACTACAA 538610 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || ||||| || ||| Sbjct 538611 CATACAGAAGGAGTCGACCCTCCACTTGGTCCTCCGT 538647 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || ||||| || || || || || ||| | || || |||| | Sbjct 537975 AATGCAAATCTTCGTCAAGACGCTGACCGGAAAGACGATTACCTTGGAGGTTGAGGGATC 538034 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || |||| || || ||||| |||||| | |||| Sbjct 538035 CGACACCATCGAGAACG-TGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACC 538093 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| ||||| || || | ||||| | | ||||||| Sbjct 538094 AGCAGCGATTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGAGTGACTACA 538153 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| || | || || || ||||| || ||| Sbjct 538154 ACATCCAAAAAGAGTCAACCCTCCACTTGGTCCTCCGT 538191 >seq652 Length=32697 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || ||||| | | Sbjct 6662 ATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGTTCT 6721 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | || | || |||| ||||| ||||| || || | || || Sbjct 6722 GACTCGATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCA 6780 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| || || |||||||||||||| Sbjct 6781 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTACAA 6840 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | ||||| |||||||| |||| Sbjct 6841 CATCCAGAAGGAGTCCACGCTTCATTTGGTTTTGCG 6876 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || |||||||| ||||||||| | || ||||| | Sbjct 6431 AAGATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGT 6490 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | || |||| | || | || |||| ||||| ||||| || || | || Sbjct 6491 TCTGACTCGATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGA 6549 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| ||||| || |||| || || ||||||||||| Sbjct 6550 TCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTA 6609 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 6610 CAACATCCAGAAGGA 6624 Score = 105 bits (116), Expect = 7e-18 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || || || || | || ||||| | | Sbjct 6889 AATGCAGATCTTTGTGAAGACCCTTACTGGAAAGACGATTACTTTGGAAGTCGAAGGGTC 6948 Query 38303 CGAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 ||| | || | |||| |||| | || || | ||||| ||||| |||||| | || Sbjct 6949 CGATTCGATCGAG--AACG-TTAAGGCCAAGATTCAAGACAAGGAGGGCATTCCCCCAGA 7005 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || |||| || ||||| ||||| || || | ||||||||||||||||| Sbjct 7006 TCAGCAGCGACTTATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCAACGACTA 7065 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||||| | || ||||| | || || ||| Sbjct 7066 CAACATCCAGAAGGAGTCAACTTTGCATCTCGTTCTCCGT 7105 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || |||||||| || ||||||||| | || || || Sbjct 11085 AAAGATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACCATCACCCTTGAGGTAGAAAA 11144 Query 38300 CACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||| | || |||| | || | || | || |||||| |||| || || ||| Sbjct 11145 TGCTGACTCGATTGAGAACG-TCAAGGCCAAGACCCAGGACAAAAAGGGCATCCCTCCCG 11203 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| ||||| | || || || |||| || || | || || ||||| |||| Sbjct 11204 ACCAGCAGCGCCTCATCTTTGCTGGAAAGTAGCTCGAGGATGGCCGGACTCTCAATGACT 11263 Query 38419 ACAACATCCAAAAGGAAGCGAC 38440 |||||||||| |||||| |||| Sbjct 11264 ACAACATCCAGAAGGAATCGAC 11285 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| | || || || ||||||| ||||| ||||| | || || || || Sbjct 10796 ATCCAGGACAAGAATGGCATCCCTCCCGACCAGCAGCGCCTCATCTTTGCTGGAAAGTAG 10855 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGAC 38440 || || |||| || || |||||||||||||||||||| |||||| |||| Sbjct 10856 CTCGAGGACGGCCGGACTCTCAACGACTACAACATCCAGAAGGAATCGAC 10905 >seq1117 Length=604131 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| |||||||| | || ||||| | | Sbjct 393663 ATGCAGATCTTCGTCAAGACTCTTACGGGCAAGACCATCACACTTGAGGTCGAAGGTTCT 393722 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| |||||||| || | || || Sbjct 393723 GACTCAATTGAGAACG-TCAAGGCCAAAATCCAGGACAAGGAGGGAATCCCTCCTGATCA 393781 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| || || |||||||||||||| Sbjct 393782 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTACAA 393841 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||| | || || ||| Sbjct 393842 CATCCAGAAGGAGTCCACCCTTCATCTCGTCCTTCGT 393878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163034126080