Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq887 87.8 2e-12 seq964 82.4 9e-11 >seq887 Length=33483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/298 (67%), Gaps = 5/298 (2%) Strand=Plus/Minus Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||||||| || ||||||||| | ||| | ||| | ||| || || ||| Sbjct 22868 ACCATCCATCTCCACCAGAAGCTGGTTTAGAGTGTTCTCCTGCTCAGAATGGCCTCCCAT 22809 Query 16037 ACCACCAG---CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 || || | | |||| ||| ||||| || || ||||||||||| | |||||| Sbjct 22808 TCCTCCTTTGCCTCCACGTTTGCGTCCGACGGCGTCGATTTCATCAATGAACAGGATGCA 22749 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| | | || |||| | || || ||||| | || || || || Sbjct 22748 GGGCGAATTCTTTCTGGCAGTGGCAAACATGTCGCGGACACGGGCCGGACCTACGCCGAC 22689 Query 16154 AAACATCTCCACAAAGTTTGCGGCGG-AACATTGGATGAAGGGGACATTAGATTCACCCG 16212 ||||||||||| || | | || ||| || ||||| || ||||| | ||| || | Sbjct 22688 AAACATCTCCAAGAATTCGGATCCGCTAACGGTG-ATGAAAGGCACATTGGCTTCTCCTG 22630 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 | |||| |||||| |||||||||||||||||||| ||| | ||| | |||||| Sbjct 22629 CCGTGGCCTTGGCGAGGAGAGTCTTACCCGTACCTGGAGGACCGGTGAGAATGGCACC 22572 >seq964 Length=244507 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 ||||| || || || ||||| ||||||||| || || | |||||||||||||| || Sbjct 34067 GTTGAAGGCATTTTTTTCTCGGGTTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGTGGA 34008 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 || ||||| || ||| | | |||||||| ||||| || ||||| ||||| |||| Sbjct 34007 CTGATGCCTGGACTCACCCACAGTAACGAGCTGATCTCCCGAGACGAAGGACTTCACC 33950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620730280004640