Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq893 116 4e-21 seq964 84.2 3e-11 >seq893 Length=1694367 Score = 116 bits (128), Expect = 4e-21 Identities = 239/351 (68%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| |||||| ||||| |||||| | || || || |||||||| || ||||| Sbjct 1629998 GTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCGGTCGGCCGCCATCTCCATGATGTC 1630057 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| || ||||||||| || ||||||||||| | || | ||| | ||||||||| | Sbjct 1630058 CTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTCCTGAAGATCCTTGGGAATGTCGGC 1630117 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCAT-CTCTT-TCG-ACCA 109676 ||| ||| || || || | ||||| |||| || ||| | ||| ||| ||| Sbjct 1630118 GATACCTTGGATGGATCCGC---CCTTCGAGATGATCTCGTTCTTGAGCTTGTCGTCCCA 1630174 Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736 || | || ||||| | | ||||| ||||| | ||| ||||| | Sbjct 1630175 CAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGATTGACGATCTGAAAGTCACCGGA 1630234 Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796 || ||| || ||| ||||| | ||||| || || | |||| |||||||| || Sbjct 1630235 GAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTCAATCGACTCGTTGTTGCCGAG 1630294 Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847 ||| || || ||||| ||||||||||| || || | ||||||||||| || Sbjct 1630295 GATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCAGAAGACTGTTGCG 1630345 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || || || |||| ||| || | ||| ||| |||| ||||| ||| ||||| ||| | Sbjct 1630848 ATCTCGGTGCACAGGTTAGAGCACTTGATGGTTCCCAGGTTCTGCTGGTTCGACTTGCGG 1630907 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 ||||| || ||||| ||||||||||| || || |||||||| |||| || ||| ||| Sbjct 1630908 TTGCAGGCGTCCTTGTAGAGCATGTAAGGAGTTCCAGTTTCGATCTGCGAGGTGACAAT 1630966 >seq964 Length=244507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/224 (69%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 ||| || || | ||||| ||||| || || ||||| ||||| |||||| | ||||| Sbjct 33939 GGCGAAGTCGCGGTGAAGTCCTTCGTCTCGGGAGATCAGCTCGTTACTGTGGGTGAGTCC 33998 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||| ||||| | ||||| ||||| ||||||||| || || || || || || Sbjct 33999 AGGCATCAGTCCACGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAACCCGAGAAAAAAAT 34058 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAG--CAAAAGGTCGAG-ACTTGT---C 119668 ||| || || |||||| |||| | ||| || | |||| | | ||||| | Sbjct 34059 GCCTTCAACGGCGGCGAACGCGATGACACG---AGTTCCGAAGGAAGCGTTCTTGTCGCC 34115 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGA 119712 || ||| ||| ||||| | |||||| || |||||||||| Sbjct 34116 GATCCAGCGGAGCGCCCAATCGGCCTTCTTCTTGATGCAGGGGA 34159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964500243600