Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq652 98.7 6e-16 seq1419 87.8 1e-12 seq1526 86.0 4e-12 >seq652 Length=32697 Score = 98.7 bits (108), Expect = 6e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | || |||| || |||| ||||| ||||| Sbjct 11280 TTCCTTCTGGATGTTGTAGTCATTGAGAGTCCGGCCATCCTCGAGCTACTTTCCAGCAAA 11221 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | |||| ||||| |||| |||||| Sbjct 11220 GATGAGGCGCTGCTGGTCGGGAGGGATGCCCTTTTTGTCCTGGGTCTTGGCCTTGACGTT 11161 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| ||| | || || || | ||| ||||| ||||||||||| |||||||| Sbjct 11160 CTCAATCGAGTCAGCATTTTCTACCTCAAGGGTGATGGTCTTTCCCGTGAGGGTCTTCAC 11101 Query 34970 AAAGATCTGCATATTCGTAGACTT 34993 |||||||||||| || | | |||| Sbjct 11100 AAAGATCTGCATCTTTGCAAACTT 11077 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||||||||| |||| ||| || ||||| ||||| ||||| || | || | || Sbjct 6874 CAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTC 6815 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || || || || || || ||||| || | || | ||||||||||| Sbjct 6814 CTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 6755 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| | ||||| ||| | || || || | ||| ||||| Sbjct 6754 CTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGT 6695 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| |||||||||||||| Sbjct 6694 CTTGCCCGTAAGAGTCTTGACAAAGATCTGCAT 6662 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || |||| || ||||| || || ||||| Sbjct 7080 TCCTTCTGGATGTTGTAGTCGTTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAA 7021 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||| ||| | || | ||||||||||| |||||| || ||| Sbjct 7020 ATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTC 6961 Query 34911 GCTATCGATTC--ACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | ||||| || ||| | || || || | || || || ||||| || || ||||||| Sbjct 6960 TCGATCGAATCGGACC--CTTCGACTTCCAAAGTAATCGTCTTTCCAGTAAGGGTCTTCA 6903 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 6902 CAAAGATCTGCAT 6890 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 6624 TCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 6565 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| ||||| |||||| Sbjct 6564 ATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 6505 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| ||| | || || || | ||| ||||| || ||||| |||||||| ||| Sbjct 6504 TCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACA 6445 Query 34971 AAGATCTGCATATTCG 34986 ||||||||||| |||| Sbjct 6444 AAGATCTGCATCTTCG 6429 >seq1419 Length=601844 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || | || || ||||| |||||||| || Sbjct 537938 TCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAG 537879 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || | || | ||||||||||| ||||| ||||| | Sbjct 537878 ATCAAGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTT 537819 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || |||||||| || | ||| ||||| || |||||||||||||| || Sbjct 537818 TCGATAGTGTCGGAAGCCTCAACCTCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTGACG 537759 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 537758 AAGATTTGCAT 537748 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || | || |||| ||| Sbjct 538640 ACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 538581 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || |||||||| || | ||| ||||||||| | || | |||||||| || Sbjct 538580 AACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGG 538521 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| |||| || || | || || || ||| Sbjct 538520 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTT 538461 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||||||||| ||||||||||| Sbjct 538460 CCTGTCAGAGTCTTCACGAAGATCTGCAT 538432 >seq1526 Length=386723 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | | | | || || ||||| || || || || Sbjct 246118 TTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCGAA 246177 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| |||||| Sbjct 246178 GATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 246237 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || ||||| || || | ||| ||||| ||||| || ||||||||||| Sbjct 246238 CTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTCAC 246297 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 246298 GAAGATCTGCAT 246309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324627419990736