Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_016763.1 Length=43221 Score E Sequences producing significant alignments: (Bits) Value seq31 623 3e-174 >seq31 Length=5916 Score = 623 bits (690), Expect = 3e-174 Identities = 967/1367 (71%), Gaps = 42/1367 (3%) Strand=Plus/Minus Query 167 CGCGCGGCAACGACCTCATCCAGCGTGTCTTTAGCGACTATGTGATACAGGAACACTGGA 226 || ||||| | || || ||||||||| | || || || | || | |||||| || Sbjct 4563 CGGGCGGCCAGCACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGG 4504 Query 227 CGCTCGTGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAG 286 ||| ||| || ||||| ||||||| || ||||| |||||||| || | |||| ||| Sbjct 4503 CGCGGGTGACCGGCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAG 4444 Query 287 TGCTCCAGGTTCCA-GCCTTGCGAAATAAACGCCAGATGATGCCCGCCGTCCTGTAAATT 345 ||||| | |||||| | | || || ||| ||||| || |||||||| ||||| | || Sbjct 4443 TGCTCAAAGTTCCATGTGTCGCTGAA-AAATGCCAGGTGGTGCCCGCCATCCTGCATGTT 4385 Query 346 CAAACCATGGCCCGCCGATGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCA 405 | || |||||||| || || ||||| |||||||| || ||||| | || |||||| Sbjct 4384 GAGGCCGTGGCCCGCGGACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCA 4325 Query 406 AGATTCCATCTGCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCG 465 || | ||| ||||| ||| || || ||| |||||||||| ||||| || Sbjct 4324 GCGCTCAACCTGGCGGTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCG 4265 Query 466 CCTAAGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCACCCTG 525 | | |||||| | || ||||||||| ||||||||||||||| |||||| || || Sbjct 4264 TTTCAAGATGCGCGCCAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGA 4205 Query 526 CAACTCCTCGACAATGGACTCTAACGCATCGAGTTTCGCGTCGTGCACTTTCTCCCAGTC 585 |||||| |||| ||| ||||| | || || || |||||||||||||| ||| |||| || Sbjct 4204 CAACTCGTCGATAATCGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC 4145 Query 586 TTTCGTTGCTTCACCATCCGGCCCCGACACATACACGGCACCGGAAGCAATCTGCAAGCA 645 | | || || || || | ||||||||| || ||| || ||||||| ||| Sbjct 4144 GGTAGACCGCTCGCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAGGCA 4085 Query 646 CTTAGCCGTTTTAGCGGCGGCGTTAGCCGCTTCAACTTCTCCGCTCTCCAGTTCCGCGAA 705 || || || || || ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 4084 TTTGGCGGTACGGGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGCGAA 4025 Query 706 TAACTCCTCCTCCATATCGATGTAGGCTTGACGCGCTTTCTTCGGCAGGTCAATCTCAAC 765 || || |||||||| || |||| || | ||||| || |||| || | | || Sbjct 4024 TAGCTGTTCCTCCATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGACGAC 3965 Query 766 CGGTACAATAACCGGTGCTTCACAACCGAACCACTCGGCGGCATCAATGGTAAGGCTGAT 825 ||| || | || || ||||| || || ||||||| || || | ||| || |||| Sbjct 3964 CGGGACGACGACAGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACTGAC 3905 Query 826 ATCCTTCATCTTCTGGTGAATCTCGTTATCCGCGCCTGGGCGAGCATGGTACTCCCGCGC 885 || |||| |||||||| |||||| | || || || |||| | ||| || || || Sbjct 3904 GTCTTTCAGTTTCTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGTATTCGCGGGC 3845 Query 886 CATCGCA--GATTTGCCTTTCTGTACCGAGTTAAACCATCTATCGGTAAAGGCCGTGTAT 943 || | ||| | |||||||| |||||| | ||||| | |||||| || || ||||| Sbjct 3844 GG-CGTAATGATCT-CCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTGTAA 3787 Query 944 GAAGACCCAAGGCGTTCACCCGCGTCGATGAACCAGTTCTGACCCCACAAGTCTTTGAGG 1003 || || || || || || || |||| |||||||||||||||||||| ||||||||| Sbjct 3786 GAGCTGCCGAGACGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTGAGG 3727 Query 1004 CCGTTTGGTGATGGTGTACCGGTCAGGTTAATGAAACGCTTAACTTTACCGAACGCCACC 1063 ||||| |||||||| ||||||||||| || || || ||||| || ||||||||||| || Sbjct 3726 CCGTTCGGTGATGGCGTACCGGTCAGATTGATAAAGCGCTTCACCTTACCGAACGCTACT 3667 Query 1064 TTACTAAGCGCCTTTGCCCGCTTGCTACCGCCTGAACGGCTGCGGAAAGATTTCAGTTTC 1123 ||||| || | ||| || |||||||||||||| || ||||||||| ||||| || ||| Sbjct 3666 TTACTGAGTGTCTTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTAAGCTTC 3607 Query 1124 GTGCTCTCATCGGCCACGATAACAGTAAAAGGCCAGTCGTCTTTGCCGTAGTAATCAATC 1183 || ||| ||||| || || || || || ||||| |||| |||||| || | | | Sbjct 3606 GTCGACTCGTCGGCAACAATGACGGTGAATGGCCACGCGTC---GCCGTAATAGCCGACC 3550 Query 1184 AGCCACTCGATAACTTCGTAGTTAGTGCACACCACATT---AGCGTCCGACTCCAGCGCC 1240 | ||| ||||| || || |||||| ||||||||| || | |||| | ||||||| Sbjct 3549 AACCAGTCGATCACCTCATAGTTAACGCACACCACGTTGAAATCGTC---GTTCAGCGCC 3493 Query 1241 GCTATGCGG--CGCTTCTCCGAACCGGTTGCATCGATGACACGAAGGCAAGGGAACCCCC 1298 || | |||| || ||| | ||||| | || | ||| || ||||| ||||| ||| Sbjct 3492 GCCAGGCGGTCGGCCTCTTTG--CCGGTGCCGTCCACGACGCGCAGGCATGGGAAATCCC 3435 Query 1299 ACTTAGTTTGTTCCGCGGGCCACGTACCCGACGCAACACGCAACGGGGCGAGGATTAATA 1358 |||| ||||| || ||||| || || || ||||| |||| ||| || ||||| | | Sbjct 3434 ACTTCACCTGTTCGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAAGCA 3375 Query 1359 CCCGGTCTTC-TTCT--GTTAGCTG--CC-----------CGTTG-----CGAAACAGGC 1397 |||| || | ||| |||| | | || | ||| | ||||||| Sbjct 3374 CCCGATCGCCGGTCTGAGTTACCGGGTCCCAATCTTCCAGCTTTGAGGATTGGAACAGGC 3315 Query 1398 GGCTAAGCACCCACATTGTCGACGAGGTCTTGCCGCCACCCA-TACCGCACCATATATTG 1456 || | ||| |||||| || | | |||||||||| |||| | ||| ||| | |||| Sbjct 3314 GGTTCAGCGTCCACATGGTGGCCCCGGTCTTGCCGGAGCCCATTGTCGC-CCACACATTG 3256 Query 1457 CAACGTGGGTGCTGTAGCATAAACGACGTCATTATTTTCTGGTATTC 1503 || |||||||| | |||||| | |||||||| ||| || ||||| Sbjct 3255 CAGCGTGGGTGACGCAGCATATGCCGCGTCATTAGTTTTTGATATTC 3209 Score = 379 bits (420), Expect = 6e-101 Identities = 699/1018 (69%), Gaps = 10/1018 (1%) Strand=Plus/Minus Query 4685 TAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAATGTTCGC 4744 || ||||||||||||||||| |||||||| || ||||| || ||||| |||| || || Sbjct 1184 TAGTACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGT 1125 Query 4745 TTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCTAACAGC 4804 || || |||||||| |||||||| || |||||||| | || || |||| | |||| Sbjct 1124 TTAGCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTCGCGCGACAGGCCGAGCAGC 1065 Query 4805 AACGGCGCGTATTTCGTCGATGCGGTAGAAGCAGCCCCGAGACGCATCTCGATAATAGTG 4864 | ||| |||||||| ||||||||||| || || || || || ||||| ||||| | | Sbjct 1064 AGCGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCG 1005 Query 4865 CGGGCGTCGTCCGGTAAATCCTCATCCGCCAGCAAATCGTTTAGTGTTGACTTCTGTGCG 4924 || || |||||||| | || || ||||||| |||||||| || || ||||| ||| Sbjct 1004 CGCGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCG 945 Query 4925 TTGTGTATGCGGTGCGCTGGCGCTAGCTCCTGTAAAATAGGCAAGAAGTCTTTGCCGGTT 4984 || | || ||||| ||||| || || | | | |||| |||| ||||| Sbjct 944 TTCGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTC 885 Query 4985 AGTGAACCGCCATATTTACGTTG--GGCTTCTTCCTGTAACTCTTCTTTATGGCGCGTGA 5042 || | ||| || | | ||| ||| || |||| | ||||| || |||||||| | Sbjct 884 AGGCCGCTGCCGTACT--CCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCGTCA 827 Query 5043 CTGCTTCAATCGCTGCTTCCGCCAATGCCACATCAACCTTAAATCCTCGGTCATTAATCA 5102 | || || |||||||| | ||||| | || || || || || ||||| || |||| Sbjct 826 CGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGATCA 767 Query 5103 CCTGGTCTAAGT-GCAGCACGCGGTCTTCGAACTCAGAATTCCCCCACTTAGGCATTTTC 5161 |||||| |||| ||| | || || ||| | || ||||| | || || Sbjct 766 GCTGGTC-AAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGG 708 Query 5162 TTATACACTTCACGCATGGACGTAATGTCGCTTTTTGCGTATGCAATAAATTCTGCCCAC 5221 | |||||| || ||||||||| |||||||| ||||| || |||| |||||| Sbjct 707 TAATACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCAC 648 Query 5222 TCTTTTGGGTGGGTATCGGCAGTATAACGTCGAATCTTATAGTTCTTGGGCGTAGGCTTA 5281 || | ||||| ||| |||| || || || || | ||| || ||| |||||||||||| Sbjct 647 TCGTCGGGGTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTA 588 Query 5282 CTGAATCGCTGTATCAGCGCCTTACCACGTTTATCCTTAGC--CATGCTTGCGTCAATGT 5339 | ||| || | ||||||||||| || || ||||| || |||| | || | | Sbjct 587 CAGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTTGGCGTTCTGCT--CATCGACGC 530 Query 5340 TTAAAACCTCACACAGCGCGGCCAGTGAACCCGGGAGGGCATGTCGGAACGCGACTATCA 5399 || || || || || |||| |||||| || || || |||||||| | |||| Sbjct 529 CTAGCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCA 470 Query 5400 TAGTGTCTATAATGTTTTCTACCAGGAGTTCGAATCCCCAGCAATGCTTAATAACTGGTC 5459 | |||||| || || | | ||| ||| | |||||||| | || | | | Sbjct 469 TGGTGTCTTCGATATTGGCCGGCGGGATATCGTAGCCCCAGCATTCTCGCATCAGCAGCC 410 Query 5460 GGTCGAACATAAGGAAGTTTTGGCCTACCAGTTTGAGATTGCTGTCTGGTTTTTGCAGCT 5519 ||||||||| ||| ||| || ||||||| | | | | || || | ||| | Sbjct 409 GGTCGAACAGCAGGCCGTTCTGCATTACCAGTCGGCTTTCGGTATCGGGCCTCGCCAGTT 350 Query 5520 TTAGCATCGCCCGACGCAAATCACGCGGCATATCGCTGCCGTCGGTGGCGTCCCATACTT 5579 ||| ||| || || || |||||||| |||||||||||||||||||||||| | Sbjct 349 CGCGCAGCGCACGTTTCAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCCATACCT 290 Query 5580 GCACAGGGCCTTCATCGAAAGCGTAGGTGCAGATAACAATTTCGGTAGTCGGATGTTCGG 5639 |||| | || ||||| |||||| ||||||| | |||||||||| | ||||| | Sbjct 289 GCACCTTTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGTGTTCCG 230 Query 5640 CGTAAGCATAGGAACCGACtttttttAAATCGGCTTCTGAAAATGTTTCAGTATCGAG 5697 | || ||||||| ||| |||||| || |||||||| ||| | || || |||||||| Sbjct 229 CATACGCATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGAATACGTCTCGGTATCGAG 172 Score = 113 bits (124), Expect = 1e-20 Identities = 139/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 2243 TATAATAGTGTTCTATTAATTTATCAACCTGTTTCTTCGACCCAACAACAAAAACATTTG 2302 ||||||||| | | |||| | |||||||| || || || ||| ||||| | Sbjct 2754 TATAATAGTTTGCGATTAGGCTGTCAACCTGCGATTTGCTGCCGACGGTAAACACATTGG 2695 Query 2303 CGCCGCGTTTACGCATCCTCTCGTGCTCGCGCAACTGGTGCGGGTCTGGCTTCGTGTTTT 2362 ||||||| || |||| | ||||||||||| |||||||||||||| ||| | Sbjct 2694 CGCCGCGCTTTTGCATGCGTTCGTGCTCGCGTGCCTGGTGCGGGTCTGTGCCGGTGGCCT 2635 Query 2363 CGTCTTTCTTCACCTCGACGAACCAGATGATGCCACCGGGGAGAATCACCAGCAGGTCAG 2422 ||||||||||||||||||||||||| | || ||| | || |||| ||||||||| || | Sbjct 2634 CGTCTTTCTTCACCTCGACGAACCACACGACGCCTCTCGGCAGAAGCACCAGCAGATC-G 2576 Query 2423 GAGCGCCCA 2431 | || |||| Sbjct 2575 GGGCACCCA 2567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138183036829852