Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1448 93.3 3e-14 >seq1448 Length=718282 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 30183 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30242 ||||||||| || | ||| || |||||||||||||| | | | ||| ||| ||||| Sbjct 562497 CTGGAACCCATAAATCGGCCCAAGGTCTCCCTCTTCGCGCTCCGTGAATCCCAAATTGTC 562438 Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302 || ||| | | |||||||| |||||| || || || |||||| ||| ||| | || Sbjct 562437 CAGGAAGGCGCGCGAACCGTTTAAGTCCCAAATTTTAACTCCCTTCGCGGTGAGGTTCTT 562378 Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362 | ||| ||| | | || |||||| || ||||| |||| | ||||| ||||| Sbjct 562377 CGCGTTCGTGTCGGCCCCGATGAACCAATTGAGTTCCTCGACGATTCCTTTCCAGAAGAC 562318 Query 30363 CCTCTTGGTCGTGA 30376 | ||| ||||||| Sbjct 562317 GCGCTTCGTCGTGA 562304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29939 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 29998 ||||||| || || | |||||||||| |||||| | || || | ||||| |||| | Sbjct 562827 CCATGTCTCCAGAACGCTGGTAGAGCAAACACGATACTTCGCCTTTCTTCACGAAAAATT 562768 Query 29999 GACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTT 30043 | ||||| ||||||||||| ||||||||||| | ||||||||| Sbjct 562767 GGCACATCGTGTGGCACGGTGGAAGAGCCATCTTGTCCAAGTCTT 562723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408609821197826