Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1419 93.3 3e-14 seq1347 93.3 3e-14 seq652 87.8 1e-12 >seq1419 Length=601844 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| || ||| | || | || ||| Sbjct 538640 ACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 538581 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| |||||||| |||| |||||| || || | ||||| ||||||||| || Sbjct 538580 AACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGG 538521 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || ||| |||| ||||| | || ||||| ||| Sbjct 538520 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTT 538461 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||| || || || |||||||| Sbjct 538460 CCTGTCAGAGTCTTCACGAAGATCTGCAT 538432 >seq1347 Length=405773 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||||||| || |||||||| ||||| || | || | |||||||||||| |||||| Sbjct 393126 CTTACCGGCGAAGATCAGTCGTTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTT 393185 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | || || || || |||||||| | || |||||||| ||||| Sbjct 393186 CGCCTTAACATTCTCGATCGAGTCCGAGGCTTCCACCTCGAGGGTGATCGTTTTACCCGT 393245 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||| Sbjct 393246 CAGGGTTTTGACGAAAATCTGCAT 393269 >seq652 Length=32697 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| |||||| ||| || || || ||||| || ||| | || Sbjct 6879 AGGCGCAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGG 6820 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || || || || || ||||| ||||| | || | ||||||| Sbjct 6819 CCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCC 6760 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | || || || | || ||||| | || Sbjct 6759 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTG 6700 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | ||| || ||||| |||||||| Sbjct 6699 ATGGTCTTGCCCGTAAGAGTCTTGACAAAGATCTGCAT 6662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || ||||| || |||||||| ||||| | ||||| |||||||||| Sbjct 7044 TCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTG 6985 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || || | | || || ||| | || || |||| |||||| Sbjct 6984 TCTTGAATCTTGGCCTTAACGTTCTCGATCGAATCGGACCCTTCGACTTCCAAAGTAATC 6925 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || | || || ||||| |||||||| Sbjct 6924 GTCTTTCCAGTAAGGGTCTTCACAAAGATCTGCAT 6890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930348138526