Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq964 219 8e-52 seq893 208 1e-48 >seq964 Length=244507 Score = 219 bits (242), Expect = 8e-52 Identities = 418/613 (68%), Gaps = 11/613 (2%) Strand=Plus/Plus Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || || || |||||||| |||||||| | ||||| ||| | ||||||||| || | | Sbjct 33766 AGATGGTCGGCGACGTATTCGATGTACTGGGACATCAGGTCGCAGTTCATGCCAATCATG 33825 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 |||||| | | || |||||| |||||| ||| |||| ||| ||||| | | ||| Sbjct 33826 TCCACGGGAAGCGACTCGGTGAGATACTCCTGCTCGATCTTCACCGCTTCACGGATAATT 33885 Query 48077 TGCTTAA----CGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 | || | | || || ||||| || | ||| | |||| || | | || Sbjct 33886 TCATTGATCTTCTCGT---TC-GAGGGCTTCTGCTCCAGATACTTG---TACATAAGACA 33938 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||| ||||| | ||| | |||||||| ||| ||| ||| |||| | | ||| || Sbjct 33939 GGCGAAGTCGCGGTGAAGTCCTTCGTCTCGGGAGATCAGCTCGTTACTGTGGGTGAGTCC 33998 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||| | || | || ||||||||||| || || ||||| || || ||||| || || Sbjct 33999 AGGCATCAGTCCACGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAACCCGAGAAAAAAAT 34058 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||| || || || ||||||||| ||| | |||||| |||||||||||||| ||| Sbjct 34059 GCCTTCAACGGCGGCGAACGCGATGACACGAGTTCCGAAGGAAGCGTTCTTGTCGCCGAT 34118 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 |||| |||||||| || ||||||||||||||||| || | | | | ||| ||| Sbjct 34119 CCAGCGGAGCGCCCAATCGGCCTTCTTCTTGATGCAGGGGAACTCTTGCAGGGCGTTGAA 34178 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 |||| | |||| ||| | ||| || || | || || || | ||||||||| Sbjct 34179 GAGCATGTTGCGCTCTTTGGGGTCGATGACGTAAGCTTCGATCATTTTGGAGTACATCTC 34238 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || |||||||| | ||| |||| || || || || Sbjct 34239 GGAGTGGATGCCCTCTACCGCCATCTGGAAGCTGTAAAAGGAGAGTGCTTCGGGCATCTT 34298 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || || ||| | ||| | || || |||||||| || ||||| ||||| || || Sbjct 34299 GACCTCCTGGGTGAAGCGCTCGACGAGGTTTTCATTGACAATTCCATCCGAAGCGGCGAA 34358 Query 48553 GAAGGCAAGGACA 48565 ||| || || ||| Sbjct 34359 GAACGCCAGCACA 34371 >seq893 Length=1694367 Score = 208 bits (230), Expect = 1e-48 Identities = 647/981 (66%), Gaps = 48/981 (5%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||| ||||| |||||| ||| | | | | | ||| || ||||| || ||||| || Sbjct 1629998 GTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCGGTCGGCCGCCATCTCCATGATGTC 1630057 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAA-GCCGG 212814 |||| || | ||||| || |||||| | | || | || |||| |||||| | ||| Sbjct 1630058 CTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTCCTGAAGATCCT-TGGGAATGTCGG 1630116 Query 212815 GGATGTTCTGCACAGACCC--CCTGTGT-ATGGTCAGCTGCAGGCGCATGTCCTCGTTCC 212871 ||| || | || || ||| | ||| || | | | || |||| || || Sbjct 1630117 CGATACCTTGGATGGATCCGCCCTTCGAGATGATCTCGTTCTTGAGCTTGTCGTC---CC 1630173 Query 212872 AGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCT 212930 | ||| | | || |||| || | ||| ||||| ||||| ||||| |||||||| Sbjct 1630174 ACAGGTTCA-GCTCAACCAGATCTTTCAGCAGATGAGGATTGACGATCTGAAAGTCACCG 1630232 Query 212931 GAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCC 212990 ||||| || | | ||||| ||| || ||||| ||||| || ||||||||| || Sbjct 1630233 GAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTCAATCGACTCGTTGTTGCCG 1630292 Query 212991 AGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCG 213050 || ||||| || ||| ||||||||||| || || ||||| |||||||| | ||| ||| Sbjct 1630293 AGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCAGAAGACTGTTGCGCACGCCG 1630352 Query 213051 TGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTG--CC--AGACA----GGT 213102 |||| | | || | | | | |||||||| || ||| || | || || Sbjct 1630353 TGCTTGGCAATCTTCTCCTTCAACACGGCCCAGTCGCA-CTGATCCGTGGGCACCACGGG 1630411 Query 213103 CCT--CGTCCTTCA--CGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTG 213158 | | ||| ||||| || ||||||| || |||| | | ||| ||||| || Sbjct 1630412 CTTGCCGT-CTTCAGTCG-TCCACATCTCGTACTGGAGAACGCCACGACTCACAGGCGAA 1630469 Query 213159 CCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCA 213218 |||| ||| | ||| || || | || || ||||| ||||| || | | ||| | Sbjct 1630470 CCCTCGTAGGTTTCGTATGGTCCGTACTGCTCCGCCAGTTCGCATGAAGATTCCAGAGAG 1630529 Query 213219 GCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG------GGAC 213272 |||| ||||||| ||| || || | |||| | | ||| || || | | Sbjct 1630530 GCGTGGTAGATGACTTCGAAGATTCTCTTGTTCATATCACGGGCTTCGGGACTGGTGAAA 1630589 Query 213273 GTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATG 213332 | |||| |||||||||| ||| | || || || || || || || || || || Sbjct 1630590 GGGAAGCGCATCATCAT------GAAAGCGTCCGCAAGGCCTTGAACGCCAATTCCAATA 1630643 Query 213333 GGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATG 213392 || | ||| | || || ||| | | | ||| | ||||| |||||| |||||| Sbjct 1630644 GGACGGTGACGCATATTGGACGTTGCGGCCTCGAGAATCGGGTAGTAGTTGCCGTCGATA 1630703 Query 213393 ATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA---CATGGGCCAGGTACTCGTGATTG 213449 |||||||| |||||||| ||| | |||||||||| ||||| || | ||| | | | Sbjct 1630704 ATCTTGTTAAGGTTGCGAGTGACGACTTTGGTGATCGCATGG---AGCTTCTCATAGTCG 1630760 Query 213450 AACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACG 213509 || | | || |||| || || ||| ||||| |||| |||||| ||| Sbjct 1630761 AAGGTCTTGTCC---TCCTTGACGAAGCGGTTCAGCGCGATCGAAGCCAAGTTGCACACG 1630817 Query 213510 GCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATG 213569 || || || | | | ||||| | |||||||||||||||||| ||| |||| Sbjct 1630818 GCGACTTCTTCCGGCGACGAGTACTGAACGATCTCGGTGCACAGGTTAGAGCACTTGATG 1630877 Query 213570 GTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGG 213628 || ||||||||||| ||||| ||| ||||| | ||| | ||||||||||||||||| || Sbjct 1630878 GTTCCCAGGTTCTGCTGGTTCGAC-TTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 1630936 Query 213629 GGACCCGGTCTCTAGCTGGGA 213649 | || || || | ||| || Sbjct 1630937 AGTTCCAGTTTCGATCTGCGA 1630957 Score = 84.2 bits (92), Expect = 4e-11 Identities = 281/428 (66%), Gaps = 26/428 (6%) Strand=Plus/Plus Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053 ||||| | | || || | ||| | ||| |||||||| |||||||| || || || Sbjct 1631394 TGTTGTACACACGGAGCATGGGGATCAGACCGTTGGAGGTGCCGTTGGTACCTGCGATCA 1631453 Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGAG-----AGCCCTATGCCACCGGCGTACTT 214108 || || ||||| | || ||| | ||| || || ||||| |||||| |||| Sbjct 1631454 TCGTTCCCGAGGCAC---GGATGC--AGTGAGCGTTAAGTCCGATGCCTCCGGCGGACTT 1631508 Query 214109 GGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTG-A 214167 ||||||| |||||| ||| || |||| | ||||||| | ||| ||| || ||| | Sbjct 1631509 AGAGATCAGGGCGCACTGCCACAGGGTCTTGAAGATGCCGTCGATGGAGTCGTC-GTGCA 1631567 Query 214168 GGTTCAGCAAGAAGCAG---CTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCG 214224 |||| | |||||| ||| | ||||||| || | | || | |||||| || | Sbjct 1631568 TCGTCAGGAGGAAGCACGAACTC---ATCTGGGGCTTGCAGGTTCCGGCGTTGAAGAGGG 1631624 Query 214225 TGGGGCTGGCATGGATCATAAACTTGTTA---GAGAGGAGCCTGTAGGTCTCCAGGACTG 214281 | || || || | ||||| | | || | ||| ||||||| || | | ||| Sbjct 1631625 TAGGCGACGCGTG---CGTAAACCAGCGATCCGACATGAGGTTGTAGGTTTCGATGGCTG 1631681 Query 214282 AGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCT 214341 | |||||| | |||||||| | || | ||| ||||||||||| || | || Sbjct 1631682 CGTCGATGTCCTCCTTGTGGACTCCCACGGCTACACGCATAAGCATGTGCTGCGGACGCT 1631741 Query 214342 CTATGGGTCCTTTGGG-GCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAG 214400 | || || | | | ||| |||| ||| || || ||||| ||||||||||| || Sbjct 1631742 CGGTGA-TCTTGCCGTTGATCTTCAGCAAGTACGACCGTTCCAGGGTCTTGAACCCGAAA 1631800 Query 214401 TAGGAGTA 214408 |||| ||| Sbjct 1631801 TAGGTGTA 1631808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931514611822080