Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq893 134 3e-26 >seq893 Length=1694367 Score = 134 bits (148), Expect = 3e-26 Identities = 547/861 (64%), Gaps = 61/861 (7%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 || ||||| | ||||| || |||||| | || ||| | |||| || ||| | Sbjct 1630470 CCCTCGTAGGTTTCGTATGGTCCGTACTGCTCCGCCAGTTCGCATGAAGATTCCAGAGAG 1630529 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGGAGAAGTGAA 221484 |||||||||||| || ||||| ||||||| | || | ||| |||||| ||||| Sbjct 1630530 GCGTGGTAGATGACTTCGAAGATTCTCTTGTTCATATCACG-GGCTTCGGGACTGGTGAA 1630588 Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 || | |||| |||| |||||| |||| || || || || || || || || || || | Sbjct 1630589 AGGGAAGCGCATCATCATGAAAG-CGTCCGCAAGGCCTTGAACGCCAATTCCAATAGGAC 1630647 Query 221544 TGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603 ||| | | | ||||| | || || || | | || || ||||| ||||||| | | Sbjct 1630648 GGTGACGCATATTGGACGTTGCGGCCTCGAGAATCGGGTAGTAGTTGCCGTCGATAATCT 1630707 Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCA 221663 |||| ||||| |||||| |||||| | | | ||||||| | | ||| | Sbjct 1630708 TGTTAAGGTTGCGAGTGACGACTTTGGTGATCGCATGGAGCTTCTCATAGTCGAAGGTCT 1630767 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTAC 221723 || | || | | || ||||| | | || || |||| ||| | Sbjct 1630768 TGTC--CTCCTTGACGAAGCGGTTCAGCGCGATCG--------AA-----GCCAAGTTGC 1630812 Query 221724 ACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 ||||||| || || ||| | ||||| | |||||| || || ||||| ||||| Sbjct 1630813 ACACGGCGACTTCTTCCGGCGACGAGTACTGAACGATCTCGGTGCACAGGTTAGAGCACT 1630872 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 ||||||| ||||||| | || || |||||||| ||| ||||||||||||||||| Sbjct 1630873 TGATGGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGT 1630932 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC------TGG 221897 | ||| ||||| || | ||| | | ||||| |||||||| | | || Sbjct 1630933 AAGGAGTTCCAGTTTCGATCTGCGAGGTGACAATCTCTTCCCAGAGAGCACGAGCCTTGA 1630992 Query 221898 CGCTC-------ACCGTCC-TCTTGACTGCACCC-----------------TCG-GTCTT 221931 ||| | | ||||| || || | ||| ||| ||||| Sbjct 1630993 CGCGCTTCTTGTAGCGTCCCTCCTGCTCGTACCTATAAAGAAACAATGACTTCGAGTCTT 1631052 Query 221932 ----------TTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCA 221981 | | ||| ||| |||||| | ||||||| ||| ||||| | || || Sbjct 1631053 GATATAGCTATACTTACTGGGTGTAGAGCTTTTCAAACTCTTCTCCGTAGGTGTCAGGCA 1631112 Query 221982 GGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCA 222041 | || || ||| || ||||||||||| ||| | ||| | || ||||| | | || Sbjct 1631113 GTCCCGGGCACTTGTGGGGACACATCAAGGACCATTCCTTATCATCCTTGACACGTTCCA 1631172 Query 222042 TGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGC 222101 |||| ||||| || |||||||| | | || || || | || |||| ||||| | Sbjct 1631173 TGAACAGGTCAGGAATCCACAGGCCATAGAAAAGGTCACGGGCGCGCTCTTCCTCGGATC 1631232 Query 222102 CGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGA 222161 || |||| | |||| || ||||| || || || |||||||||||||| | |||| Sbjct 1631233 CGGTGTTGCGCTTCAGGCGCAGGAACTCGAAGATATCGGCGTGCCACGGCTCAACGTAGA 1631292 Query 222162 CGGCCAGAGCGCCGGGTCGCT 222182 ||| | || || || |||| Sbjct 1631293 TGGCAAACGCACCAGGACGCT 1631313 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||| | ||| || ||| |||| || || |||||||||||| ||||||||||| ||| Sbjct 1630250 GTAAATGTTGGAGGTGTACGGCTCAATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGA 1630309 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 || |||||||| ||||| ||||| ||||||||||||| Sbjct 1630310 CGCTGTGGGCATCGGTGCGACCAGAAGACTGTTGCGCA 1630347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928826664305280