Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1419 102 5e-16 seq988 93.3 3e-13 seq1526 91.5 1e-12 seq652 86.0 4e-11 >seq1419 Length=601844 Score = 102 bits (112), Expect = 5e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 |||||||| |||||||| || || || | || || ||||| |||||||| || |||||| Sbjct 537902 TCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGAATGCCCTCCTTG 537843 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| |||||| ||| ||||| || | | | || | |||||||||| Sbjct 537842 TCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACCT-CAAGGGTAAT 537784 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||||||||| ||||| ||||| Sbjct 537783 GGTCTTCCCCGTGAGAGTCTTGACGAAGATTTG 537751 Score = 98.7 bits (108), Expect = 6e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 |||||||| ||||| ||||| || |||||||| || ||||| ||||| |||||||||||| Sbjct 539089 TCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTG 539030 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| ||| || ||||| || |||| | | | || ||||| || Sbjct 539029 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGA-CCTCCAGGGTGAT 538971 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| ||||| || || Sbjct 538970 CGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 538938 >seq988 Length=203328 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| || || || || |||||||| || |||||||| ||||||||||||||||||||||| Sbjct 72308 CTTACCGGCGAAGATGAGACGTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGAATCTT 72367 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 || ||| ||| || || || | | | || ||||| || |||||||| || Sbjct 72368 GGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACCTCGAGGGTGATCGTTTTACCCGT 72427 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 ||| || || |||||||| || Sbjct 72428 GAGGGTTTTGACGAAAATCTG 72448 >seq1526 Length=386723 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| || ||||| || || ||| || | || || || ||| || | Sbjct 246316 ACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTC-GCTGAGGG 246374 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| |||||||| ||||| || ||||| || || || || ||||| |||| Sbjct 246375 TACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGGATTC 246434 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 |||||||||| || ||||| ||||| || || || || | | | | ||| Sbjct 246435 CTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGA-CTTCC 246493 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 246494 AGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTG 246534 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| || ||||| || || ||| || | || || || ||| |||| Sbjct 246088 ACGGAGACGGAGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTC-GCTGAGAG 246146 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | || || ||||| ||||| ||||| || || ||||| || || || ||||| |||| Sbjct 246147 TCCTTCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATTC 246206 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 |||||||||| || ||||| ||||| || || || || | | | | ||| Sbjct 246207 CTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGA-CTTCT 246265 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| |||||||| ||||| || || Sbjct 246266 AGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 246306 >seq652 Length=32697 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| || ||||| |||| || || || | || || || || Sbjct 7111 ACGAAGACGGAGAACGAGATGCAAAGTTGAC--TCCTTCTGGATGTTGTAGTCGTTGAGG 7054 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||| ||||| ||||| |||||||||||||| || || ||||| || ||||| Sbjct 7053 GTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGAATG 6994 Query 480669 CCTTCCTTGTCTTGAATCTT 480688 || ||||||||||||||||| Sbjct 6993 CCCTCCTTGTCTTGAATCTT 6974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268112198241176