Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq31 181 3e-41 >seq31 Length=5916 Score = 181 bits (200), Expect = 3e-41 Identities = 329/473 (70%), Gaps = 15/473 (3%) Strand=Plus/Minus Query 2425 GGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTGCAGCGGTCGCGCACGCTC 2484 ||||| ||| |||| ||| || ||||| || || || |||||||| |||||||| ||| Sbjct 5159 GGCGATTTGCTAAGCAAGAAAATATACTCATGGGCTTTCGTGCAGCGATCGCGCACACTC 5100 Query 2485 TCCGGCATTGGGTTTGGCTTGTGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCT 2544 |||||||||||||| ||||| ||||| || || ||||| || | ||||||||||| || Sbjct 5099 TCCGGCATTGGGTTCGGCTTATGCCATATGATGTCCTGCCGTAAATACCAGCCGTCCGCA 5040 Query 2545 TGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGTCTTTTGCTTTCAATCCGTTA 2604 |||||||||| || | ||| || |||||||| |||||||| |||||| || | Sbjct 5039 CGCAGGGCGAAGGCCAGCATCCACGGAATGCCGATCAGGTCTTTATCTTTCATCCCCTCC 4980 Query 2605 GGTGC---AGATCGTGACCCGCTGTCGCTGTGGCCTTCTTTCACAACCCG--GTTAGCCC 2659 || || ||| ||| || | | || | || || | | | || | |||| | Sbjct 4979 GGCGCTTTAGA-CGT--CCGGTCGCCGATCTG--CTCCATGCTTCGCCGGGTGTTACCAG 4925 Query 2660 CCACGCCT-TTTTGGTCATTTCTTCCAGAATGGTTTCCGCCTTGGCTGGCATAGCTGTCC 2718 || | || || || ||| | || | || || || |||||||||||| Sbjct 4924 CCTTGGCTGAAACGGACA--CCTTGC--GATCCGTCCCTCCGGTGCGGGCATAGCTGTCG 4869 Query 2719 CCAAGATTCAACCAAACTGTCCCGTCGTCACGCAGCACCCTGCGCACCTCGCGGAACACG 2778 || | || | ||| | |||||||||||| |||||||| | ||||| |||||||||| Sbjct 4868 CCGATGTTAACCCATAATGTCCCGTCGTCGCGCAGCACGCGCCGCACGGCGCGGAACACA 4809 Query 2779 CGCACCAGCGCTTCCACGAACTCATCCGGTGACGCTTCAAGGCCGAGCTGGCCGTATTGC 2838 ||||||||| || | ||| | ||||| | || || ||||| || |||| | Sbjct 4808 CGCACCAGCTGATCGATAAACGCTTCCGGCGTAGCCTCGTTGCCGATTTGACCGTCACAC 4749 Query 2839 CCGTAGTCGCGCAGGCCGAAGTACGGCGGGGATGTGACGCAACAATTAACGGA 2891 || || || |||||||| || || |||||| |||||||| |||||| || Sbjct 4748 CCATAATCACGCAGGCCAAAATAAGGCGGGCTGGTGACGCAGGTATTAACCGA 4696 Score = 143 bits (158), Expect = 7e-30 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 2059 GGTATAAGCTCAGCATAGTCTTCACTAAGCTCGCAAATCACGGCTTTTCGATTGTTGGCG 2118 ||||| || ||||| || || | | || ||||| | | || ||||| ||| Sbjct 5447 GGTATTAGGTCAGCGTAATCCTGGTTCAGTTCGCACAGGATCGCATTTCGGCTGTACTTA 5388 Query 2119 ACAGCCACGCCTGCCGTTGTTCCGCTGCCGCCGAACGGGTCCAGGACTGTGCCGTTTTCC 2178 || |||||||| |||||||| ||||||||||||||||| || || || || ||| |||| Sbjct 5387 ACCGCCACGCCCGCCGTTGTGCCGCTGCCGCCGAACGGATCGAGCACCGTTCCGCCTTCC 5328 Query 2179 GGGCACCCAGCCAGGATGCACGGCTCAATCAGATCTGGCGGGAAGGTAGCGAAGTGGGCG 2238 ||||| || ||||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 5327 GGGCATCCGGCCAGAATGCACGGTTCGATCAGTTCCGGCGGGAATGTTGCGAAATGCGCC 5268 Query 2239 CCCTTGTAGGGTCGGCTGTTGACGGTCCAGACGCTGCGGCGGTTGCG 2285 ||||| | || ||| | ||| ||| ||| |||||||||||| Sbjct 5267 CCCTTAAACGGCCGGGTAGCTACGCCCCACACGTCGCGGCGGTTGCG 5221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130099986763108