Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq277 102 2e-16 seq893 98.7 3e-15 seq1052 84.2 6e-11 >seq277 Length=1171 Score = 102 bits (112), Expect = 2e-16 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||| ||| | || ||||| || || |||| |||||| |||||| ||| Sbjct 283 ATAGTCATACGAGAGGGGACGGCGTGGGGGTTAATAATGACGTCGGGAGACAGTCCTTCA 342 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTG 251963 |||||||||||| | ||| | | || ||| | || ||||||||||| |||||||| Sbjct 343 CAAGTGAAGGGCATGT-CTTCTTGACGGTACATGATCCCCATAGTTCCCTTCTGTCCGTG 401 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 || ||| ||| || |||||||| |||| || ||| ||||| ||| | ||| Sbjct 402 TCGCGAAGCGAATTTGTCACCAATTTGAGGAAAACGGACAGAACGAACGCGGATCTTTAC 461 Query 252024 GAAGTTGT 252031 ||| |||| Sbjct 462 GAACTTGT 469 >seq893 Length=1694367 Score = 98.7 bits (108), Expect = 3e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 155637 ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTA 155696 || ||||| |||||||||||| | ||||||||| || | |||| |||||| || || Sbjct 1630845 ACGATCTCGGTGCACAGGTTAGAGCACTTGATGGTTCCCAGGTTCTGCTGGTTCGACTTG 1630904 Query 155697 CTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGA 155756 | ||| || || |||||||| || ||||| || ||||| || || ||||| | | | | Sbjct 1630905 CGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGAGTTCCAGTTTCGATCTGCGAGGTGACA 1630964 Query 155757 ATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815 |||| | |||||| |||| || || | |||| ||||| | || ||| ||| || Sbjct 1630965 ATCTCTTCCCAGAGAGCACGAGCCTTGACGCGCTTCTTGTAGCGTCCCTCCTGCTCGTA 1631023 >seq1052 Length=38001 Score = 84.2 bits (92), Expect = 6e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| ||| | || ||||| || || |||| |||||| |||||| ||| Sbjct 21726 ATGGTCATACGAGAGGGGACGGCGTGGGGGTTAATAATGACGTCGGGAGACAGTCCTTCA 21785 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTG 251963 |||||||||||| | ||| | | || || |||| || |||||||| || ||||| Sbjct 21786 CAAGTGAAGGGCATGT-CTTCTTGGCGGTACGTGATTCCCATTGTTCCCTTCTGACCGTG 21844 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 || ||| ||| || ||||| || |||| | || ||| ||| | ||| | ||| Sbjct 21845 TCGGGAAGCGAATTTGTCACCGATTTGAGGATGACGGACAGAACGGACGCGGATCTTGAC 21904 Query 252024 GAAGTTGT 252031 ||| |||| Sbjct 21905 GAACTTGT 21912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471788144330394