Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_021317.1 Length=21248 Score E Sequences producing significant alignments: (Bits) Value seq31 535 6e-148 >seq31 Length=5916 Score = 535 bits (592), Expect = 6e-148 Identities = 807/1133 (71%), Gaps = 21/1133 (2%) Strand=Plus/Plus Query 1 GACCGAGTGTTAATTCTGGCCCCTTTACGTGTTGCGTCAGGTACGTGGCCGGCAGAACAA 60 || || ||| | || ||||| || | || ||||| ||||| || |||||||| ||||| Sbjct 3368 GATCGGGTGCTTATCCTGGCGCCGCTGCGCGTTGCATCAGGCACCTGGCCGGCCGAACAG 3427 Query 61 GAGAAATGGAACTTCCCGTGTCTGAGTGTAGTAGATGCAACTGGTTCTGAGAAGC-GAC- 118 | ||| ||| | ||||| || ||| | || || || | || || | ||| || ||| Sbjct 3428 GTGAAGTGGGATTTCCCATGCCTGCGCGTCGTGGACGGCACCGG--CAAAGAGGCCGACC 3485 Query 119 GCATCGCGGCGCTGGAGTCAGACGCT---AACGTGGTATGCACTAACTACGAGGTTATCG 175 || | ||||||||| | |||| | |||||||| ||| |||||| ||||| |||| Sbjct 3486 GCCTGGCGGCGCTGAAC---GACGATTTCAACGTGGTGTGCGTTAACTATGAGGTGATCG 3542 Query 176 AATGGCTTATTGACTACTACGGCAAAGACGACTGGCCTTTTACCGTTATAGTTGCCGATG 235 | ||| | | | ||| |||||| |||| ||||| || ||||| || |||||||| | Sbjct 3543 ACTGGTTGGTCGGCTATTACGGC---GACGCGTGGCCATTCACCGTCATTGTTGCCGACG 3599 Query 236 AAAGCACGAAGCTTAAATCGTTCCGCAGCCGTTCGGGCGGGAGCAAACGGGCAAGGGCGC 295 | |||||||||||||||||||||||| || ||||| ||||| || || | | | | Sbjct 3600 AGTCGACGAAGCTTAAATCGTTCCGCAGCAAATCCGGCGGTAGCAAGCGCGCGAAGACAC 3659 Query 296 TTAGCAAGGTTGCGTTCGGTAAGGTTAAGCGTTTCATTAACCTTACCGGGACACCATCGC 355 | || || || |||||||||||||| ||||| || || || || ||||| || ||||| | Sbjct 3660 TCAGTAAAGTAGCGTTCGGTAAGGTGAAGCGCTTTATCAATCTGACCGGTACGCCATCAC 3719 Query 356 CAAACGGCTTAAAAGATTTGTGGGGTCAGAACTGGTTTATCGACGCAGGTGAGCGCCTTG 415 | |||||| | |||||| ||||||||||||||||||| |||| || || ||||| || | Sbjct 3720 CGAACGGCCTCAAAGATCTGTGGGGTCAGAACTGGTTCGTCGATGCCGGCGAGCGTCTCG 3779 Query 416 GTTCTTCGTACACCGCATTCACCGACCGCTGGTTTAATTCAGTACAGAAAGGAAAGTCGG 475 | || ||||| || |||||||| |||||||| | || || ||||||||| | || Sbjct 3780 GCAGCTCTTACACTGCTTTCACCGATCGCTGGTTCACCTCGGTGCAGAAAGGAGA-TCAT 3838 Query 476 CGATG--GCACGGGAGTACCACGCCCGCCCCGGCGCGGATAACGAGATTCACCAGAAGAT 533 | | || || || ||| |||||| ||| || || | |||||| |||||||| | Sbjct 3839 T-ACGCCGCCCGCGAATACGCGCCCCGCCGCGGTGCCGACACCGAGATCCACCAGAAACT 3897 Query 534 GAAGGATATCAGCCTGACCATTGATGCTGCCGAGTGGTTCGGTTGTGAAGCGCCGGTTAT 593 ||| || |||| |||||| | || || ||||||| || || ||||| ||| || | Sbjct 3898 GAAAGACGTCAGTCTGACCGTGGACGCGGCCGAGTTCTTTGGCTGTGACAAGCCTGTCGT 3957 Query 594 CGTACCGGTTGAGATTGACCTGCCTAAGAAAGCACGCCAGGCTTACATCGATATGGAGGA 653 ||| ||||| | | || |||| || || ||| |||| |||| || |||||||| Sbjct 3958 CGTCCCGGTCGTCGTCGATATGCCACCAAAGGCGCGCAAGGCGTACAAGGAAATGGAGGA 4017 Query 654 GAAGTTATTCGCGGAGCTAGAAAGCGGAGAAGTCGAAGCGGCTAATGCCGCTGCTAAAAC 713 || ||||||| || || || ||||| || ||||||||||| || || || || || Sbjct 4018 ACAGCTATTCGCCGAACTGGATAGCGGCGAGGTCGAAGCGGCCAACGCGGCGGCCCGTAC 4077 Query 714 GTCGAAATGCCTCCAGATTGCCTCCGGTGCTGTATACGTATCAGGGCCAGATGGCGAAGC 773 | |||||||| ||||| ||| ||| || || || || | || ||| ||||| Sbjct 4078 CGCCAAATGCCTGCAGATCGCCAGCGGGGCGGTGTATGTGACCGGCGAAGACGGCGAGCG 4137 Query 774 AACCAAAGACTGGGAGAAAGTGCACGACACGAAACTGGACGCACTGGAGTCAATTGTGGA 833 | | || |||| ||| ||||||||| |||| |||||||| |||||||| ||| | || Sbjct 4138 GTCTACCGAGTGGGCGAAGGTGCACGACGCGAAGCTGGACGCCCTGGAGTCGATTATCGA 4197 Query 834 GGAGTTGCAGGGCGCGCCGTTGCTGGTGGCGTATCAGTTTAAGCACGAACTTGAGCGCAT 893 |||||| ||||| ||| || ||||||| ||||||| |||||||| || | |||||| Sbjct 4198 CGAGTTGTCCGGCGCCCCGCTGTTGGTGGCCTATCAGTACAAGCACGACCTGGCGCGCAT 4257 Query 894 TCTTAAGCGTTTCCCACAGGCGCAGGCGTTCGCCAAAGGTGCCAAGGGCAATAAGCAGAT 953 | || || ||||| |||||||||| |||| || || || || || ||| | Sbjct 4258 CTTGAAACGGTTCCCGCAGGCGCAGGAGTTCAAAAAGGGCGCTGCCGGTAACCGCCAGGT 4317 Query 954 GGAAGCG-TGGAACCGCGGAGAGATACCTATGCTCCTG-ATACACCCAGCCTCCGCGGGT 1011 | |||| |||||| || |||| | | || || | ||||| || |||||||| Sbjct 4318 TG-AGCGCTGGAACAAAGGTCAGAT-CGAAATCTTGTGCGTTCACCCGGCGTCCGCGGGC 4375 Query 1012 CACGGGCTGTCGCTACAACACGGCGGGCACCACATGGCCTTTATGAGTCAGGGGTGGAAC 1071 ||||| || | || | |||||||||||| |||| ||| | || | |||||| Sbjct 4376 CACGGCCTCAACATGCAGGATGGCGGGCACCACCTGGCATTTTTCAGCGACACATGGAAC 4435 Query 1072 CTGGAACATTATCTGCAGGTTATCGAGCGCATAGGTCCGGTAAGGCAGATGCA 1124 | || || || |||| | | ||||| || |||||||| | |||||||| Sbjct 4436 TTTGAGCACTACGCGCAGATCGTGGAGCGTATCGGTCCGGTGCGCCAGATGCA 4488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 67873974131466