Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_021775.1 Length=42215 Score E Sequences producing significant alignments: (Bits) Value seq31 710 0.0 >seq31 Length=5916 Score = 710 bits (786), Expect = 0.0 Identities = 1324/1918 (69%), Gaps = 46/1918 (2%) Strand=Plus/Minus Query 4212 CCGATACCCGGATAACTCAGCACACGCCCGCTCGGCAGCTCTACCTTAAGCCACCACCCC 4271 ||||| || |||||||| ||||| || || ||||||| ||| || || |||||||||||| Sbjct 2069 CCGATCCCTGGATAACTAAGCACGCGACCACTCGGCAACTCAACTTTTAGCCACCACCCC 2010 Query 4272 GGCACGCGTTCGCCTTTCTCTTTG---GTGAACGTGCGGGTAATTTTAATCGCCCGGTCG 4328 ||||| ||||| || || | | ||||| |||||||| || || | ||| || || Sbjct 2009 GGCACCTTGTCGCCGTTTTCGTCGCGGGTGAATGTGCGGGTGATCTTGACCGCACGATCT 1950 Query 4329 TCGTTCTCGCGCACCGCCGCACCAGCCCAGTAAGC-CGTACCCGGGTCTTTGATGGCGTT 4387 |||| || ||||| || |||||||| | || ||| ||||| | ||||| || Sbjct 1949 CCGTTTTCTCGCACGCGGGCGCCAGCCCAAAACGCGCGT-CCCGGATTCTTGATCGCCGC 1891 Query 4388 CATCGCTGCGGATTCGAGGTCATTCCAGAACTGGCAG-GTTGCCGGGTGGGATTCTCGCC 4446 | ||| ||| ||| || || | |||||| || || || ||||||| || || |||| Sbjct 1890 CTGCGCCGCGTCTTCAAGATCCTGCCAGAA-TGCCACTGTCTCCGGGTGCGACTCGCGCC 1832 Query 4447 ACATGCGCTTAATGCTGTCACAGGTAAGCCACACATTCTTCGGCAGGTCATAAGAAGGGC 4506 |||||||||| || ||| ||||| | |||||| || ||||||||| || || || | Sbjct 1831 ACATGCGCTTGATAGCGTCGCAGGTCATCCACACCTTGCGCGGCAGGTCGTACGATGGTC 1772 Query 4507 GCTCCGCCTTCTGGCCGTTAAAGCCTTTCTTGTTCTTCTCCTGGATGCGCGCATACTCAT 4566 | || || |||| ||| || | ||| ||||||||||| ||||| || | || Sbjct 1771 GGTCGGCTTTCTTGCCCTTTGGCGCGCGCTTATTCTTCTCCTGAATGCGGGCGAATTCGA 1712 Query 4567 AGCCACGCTTGGCAGCCGCCCAGATGTGGTCTGGGAATGTGCCTTTCATCGTCTC-CGCC 4625 |||| || || || ||||| ||||| || ||||||||||| | ||| |||| |||| Sbjct 1711 AGCCGCGGCGCGCGGCGGCCCAAATGTGATCCGGGAATGTGCCATCCAT-GTCTTGCGCC 1653 Query 4626 ATCGCGTACAGGTCTAGACCGAGGTTCTTGGCAAAGGTAAGGAACGCCGCGACGCCACCC 4685 ||| ||||||||| || |||||||| ||||| || ||||||||||| || || || Sbjct 1652 ATCTGGTACAGGTCGAGGCCGAGGTTTTTGGCGAACTGCAGGAACGCCGCCACCCCGCCG 1593 Query 4686 CCGTAGCCGAGACCTAGTTCACAGGCTTTACCAATCTGACGCAGGTCTTTGCGCATTTTC 4745 ||||| || || || ||||| ||||| || || ||||| || ||||||||||| | | | Sbjct 1592 CCGTACCCCAGGCCGAGTTCGCAGGCCTTGCCGATCTGCCGTAGGTCTTTGCGATTCTCC 1533 Query 4746 TTAATATAGTCCGGCTCCATGCCAAACATCTTACCCGCGGTAACGCAATAGATATCCAGA 4805 || ||| || | || || | || |||||||| || || || |||| ||||| || | Sbjct 1532 TTGATAAAGCCGGGGTCGAGGCGGAACATCTTGCCGGCCGTTTCGCAGTAGATGTCGCGT 1473 Query 4806 CCTGCTTCG-----AACGTTGCAAGAGCTGTCTTTTCCCCTGCCAACCACGCCAGGCCGC 4860 | ||| |||| | |||||||| | ||| || | | ||| ||||| |||| Sbjct 1472 TTTTTGTCGGAGAAGACGT--CCAGAGCTGTATGTTCGCCCGAAATCCAGGCCAGCCCGC 1415 Query 4861 GCCCTTCCACGTTGGAGTAGTCGGCAACCAACAGTTTGTTGCCGATGGTGGGTATAACGC 4920 ||||||||||||| || ||||||||||| | | ||| || || | || | || || Sbjct 1414 GCCCTTCCACGTTTGAATAGTCGGCAACAACGAATTTATTACCTTTTTCAGGGACAATGC 1355 Query 4921 AGCTACGAACCGTAGTAGCTGTTAGTTTCGACACGTCATAAGCCCAGTGCGCCTTACCTT 4980 | || || || || || | || || | ||||| || | ||||| |||| Sbjct 1354 ATGATCGCACGGTGGTTGCGGCCAGCTTGGCTACGTCGAAACGTCGATGCGCGCGGCCTT 1295 Query 4981 TTAGCAACATGTCAATGCCTGTTGATAATGCGTGTTTA-CGTAATAGATAATTACGC-TC 5038 | |||| | | |||||| | | ||| ||| | || | | | ||| || Sbjct 1294 TCAGCAGCTGCTGAATGCCAAAGGCCA--GCGGGTTCAGTGTGCGCCACCACTCCGCGTC 1237 Query 5039 GGAC-TC---ACCAGGCATACGG--GTAACTTTATCCTCCGGGTCGTCATCGTAATAACC 5092 ||| || || || || | |||||| |||||||||||| |||| || || Sbjct 1236 CGACATCCAATCCTCGCGCACCGCCTCCCCTTTATTCTCCGGGTCGTCCGCGTAGTACCC 1177 Query 5093 ACGGGCTAAGTTCTGCGGCTGAAAGCCTTTACCAGCAAAACGTAAAGTTCTGGACGCACC 5152 || || | |||||||||||| ||||||||||| || | || | || | || || Sbjct 1176 GCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGTTTAGCCCC 1117 Query 5153 GCCATACTGAATACAACCGCGACGGCGACCATCGGCGGACAGGCCCAGCAGAAGTGGATT 5212 || ||||| | || ||||| ||||| || ||| |||||||| ||||| || ||| Sbjct 1116 TCCGTACTGCAGGCACCCGCGGCGGCGCCCGTCGCGCGACAGGCCGAGCAGCAGCGGAGC 1057 Query 5213 GTACTTGGTCGATGCCGTGGAGCTGGCCCCCAGGCGCATTTCTATAATCGTGCGGGCGTC 5272 ||| || |||||||| ||||| || |||||||||||||| || | | ||| || || Sbjct 1056 GTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCGCGCGCCTC 997 Query 5273 ATCAGGCAGGTCATCGTCAGCCAGCAGGTCATTGAGAGTAGACTTCTGTGCATTGAGAAT 5332 || |||||||| ||| ||||||||||| || || || || ||||| || || | || Sbjct 996 GTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCGTTCGGGAT 937 Query 5333 CTCATGGCCGGGCGCGAGGTTCCGCAGCGTAGGCAGAAAATCAGCACCGGTAAGGCCCGC 5392 ||||| | ||||| |||| |||||||| ||||| || || ||||| ||||| Sbjct 936 TTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTCAGGCCGCT 877 Query 5393 ACCCCATTTAGCGTTTGCTTCCGCCTGGAGTTCAATCTTGTGTTGCTTCACCGCTTCGAT 5452 || | | | | || || ||||| || || |||||| || |||| || ||||| Sbjct 876 GCCGTACTCCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCGTCACGGCCTCGAT 817 Query 5453 TGCTGCGTTAGCCA--GCGCCGTATCGACGTAGAAACCCCGGTCATTGATGCGCTGGTCG 5510 ||||| || |||| || || || || |||| || ||||| ||||| ||||||| Sbjct 816 CGCTGCCTTGGCCAAGTCGACG--TCCACACAGAAGCCGCGGTCGTTGATCAGCTGGTCA 759 Query 5511 ACCGCCAGGACGGTGTTCTCAAACTCAGTGTTACCCCACTGCGGCAACGAATGGTAAACC 5570 | |||||| |||||| ||| ||||| ||||| ||| | | || ||| Sbjct 758 AGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGGTAATACACC 699 Query 5571 TCACGCATTG-CAGAAATATCTGACTTGGCATAGGCCAGGAATTCAGCCCATTCGCCAGG 5629 || ||||| | ||| || || ||| || | ||||| ||||| ||| | || Sbjct 698 TCGCGCATGGACAG-GATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCACTCGTCGGG 640 Query 5630 GTGAGTCTCTTTGGTGTAGCGGCGAACTTTGTAGTTCTTCGGCGTGGGCTTACAGAAGCG 5689 ||| || | ||||||||||| || ||||| ||| ||||| |||||||||||||| Sbjct 639 GTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTACAGAAGCG 580 Query 5690 CTGAATGAGCGCCTT-CCCGCGCTTGTCCTTGGCGTTCTCCTCTTCAACCTGCAACACCT 5748 | || |||||||| ||||| ||||||||||||||||| ||| || || | ||| Sbjct 579 GTTGATCAGCGCCTTGCCCGC-CTTGTCCTTGGCGTTCTGCTCATCGACGCCTAGCACGG 521 Query 5749 GACATAGCGCGTCCAGGCTGCCTGGGAGGGAGTGGCGGAACGCGCAAATCATCGTGTCGA 5808 ||||| || |||||||| || || || | |||||||||||| ||||| ||||| Sbjct 520 TGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCATGGTGTCTT 461 Query 5809 TAATGTTGCGCGGGTCGATGTCAACACCCCAGCACTCGCGCATCAGCAGACGGTCGAAGA 5868 || ||| ||| ||| || |||||||| || ||||||||||| |||||||| | Sbjct 460 CGATATTGGCCGGCGGGATATCGTAGCCCCAGCATTCTCGCATCAGCAGCCGGTCGAACA 401 Query 5869 GTAAACCGTTATGCATGACCAG-----TTTAG---CCTTGCCTCG-CTGTACCCGGCGCA 5919 | | ||||| ||||| ||||| ||| | | |||||| | || | || || Sbjct 400 GCAGGCCGTTCTGCATTACCAGTCGGCTTTCGGTATCGGGCCTCGCCAGTTCGCGCAGCG 341 Query 5920 GACCTTTGCGCAGTTCATCCGGCATACGGCTGCCGTCTGTACTGTCCCAGACCCGCACAG 5979 || ||| ||| || |||||| ||||||||||| || |||||| ||| |||| Sbjct 340 CACGTTT---CAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCCATACCTGCACCT 284 Query 5980 GCTCGTAATCGAACGCATACGAACAAATCATGATTTCGGTTTCAGGATGTTCCGAATACG 6039 || | |||||||| || || |||||||||||||| | ||||||| ||||| Sbjct 283 TTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGTGTTCCGCATACG 224 Query 6040 CGTAAGCCCCGGACTTCTTCAGGTCGACCGGAGAGAATGTTTCTGTATCGAGAAATAA 6097 | || || ||| | || |||| |||| | || | || || |||||||| ||||| Sbjct 223 CATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGAATACGTCTCGGTATCGAGGAATAA 166 Score = 547 bits (606), Expect = 2e-151 Identities = 883/1262 (70%), Gaps = 28/1262 (2%) Strand=Plus/Minus Query 554 GCCTGTATCTGGTACACGAACACCGGGCGAGGATGGCCCGCCTGATGCTGACGTACCGGG 613 ||||| ||| |||| | |||||||||||| || || || ||||| ||| || ||||| Sbjct 4530 GCCTGGATCAGGTAAATGAACACCGGGCGCGGGTGACCGGCCTGCATCTGGCGCACCGGA 4471 Query 614 CCGATACGTTCAATAACCTGCGCGTAGTGCTCGTAATTCCACGTCATCGAATAGAA-TGC 672 |||||||| || | | ||||||||||||||| | ||||| || ||| | || ||| Sbjct 4470 CCGATACGCTCCACGATCTGCGCGTAGTGCTCAAAGTTCCATGTG-TCGCTGAAAAATGC 4412 Query 673 CAGGTGGCAACCGCCGTCCTGAAGGTTGAGGCCGTGACCGGCTGACGCCGGATGGACAAG 732 ||||||| ||||| ||||| | |||||||||||| || || |||||||| || || Sbjct 4411 CAGGTGGTGCCCGCCATCCTGCATGTTGAGGCCGTGGCCCGCGGACGCCGGGTGAACGCA 4352 Query 733 CAACATAGGAATCTCGCCGCGGTTCCAGGCGTCAATCTGGTCGTTGCCTCTCTTACCCTT 792 ||| || |||| || ||||||| |||| |||| ||| || ||||| Sbjct 4351 CAAGATTTCGATCTGACCTTTGTTCCAGCGCTCAACCTGGCGGTTACCGGCAGCGCCCTT 4292 Query 793 CGCCAG-TGCTACGGCTTCCGGGAACTTCTTCAGGATGCGGGCGCGGTCATGCTGGAACT 851 | | || || || | |||||| |||| |||||| || |||| |||| | ||| Sbjct 4291 TTTGAACTCCTGCGCCTGC-GGGAACCGTTTCAAGATGCGCGCCAGGTCGTGCTTGTACT 4233 Query 852 GGTAGGCCACCAGTAGCGGCGCGCCGTTCAGCTCGTCGTATATCGAGTCCAGCGCTTCCA 911 | |||||||||| ||||| |||||| || ||||||| ||||| ||||| || |||| Sbjct 4232 GATAGGCCACCAACAGCGGGGCGCCGGACAACTCGTCGATAATCGACTCCAGGGCGTCCA 4173 Query 912 GCTTCGCGTTGTGGATAGCCTCCCACTCTTTGGTAGCC---TCTCCGTCGTCGCCAGTCG 968 ||||||||| ||| | | ||||||| ||||| | || ||||| ||||| ||| Sbjct 4172 GCTTCGCGTCGTGCACCTTCGCCCACTC---GGTAGACCGCTCGCCGTCTTCGCCGGTCA 4116 Query 969 TATACACGGCACCGCTGGCTATCTGTAGGCATTTCTGGGTGCGCGCTGCCGCGTTCGCCG 1028 |||||| || |||||||| ||||| |||||||| ||| || || |||||||| |||| Sbjct 4115 CATACACCGCCCCGCTGGCGATCTGCAGGCATTTGGCGGTACGGGCCGCCGCGTTGGCCG 4056 Query 1029 CTTCCACCTCTCCGGCTTCGAGCTGGGCGAAGAGTTCCTTTTCCATCTGGTCATAGACTT 1088 |||| ||||| ||| || || | |||||| || | | ||||| | | || | | Sbjct 4055 CTTCGACCTCGCCGCTATCCAGTTCGGCGAATAGCTGTTCCTCCATTTCCTTGTACGCCT 3996 Query 1089 TGCGGGCCTTAGACGGCAGCGGGACGACGACCGGAACCATCACAGGCTTGTCGCAACCGA 1148 |||| ||||| | |||| |||||||||||| || | ||||||||||| || || | Sbjct 3995 TGCGCGCCTTTGGTGGCATATCGACGACGACCGGGACGACGACAGGCTTGTCACAGCCAA 3936 Query 1149 AGTATTCGGCGGCGTCCACAGTAAGGCTGATATCCGCAATCTTCTGGTGAATCTCAGTGT 1208 || | ||||| |||||||| || || |||| || | |||||||| ||||| |||| Sbjct 3935 AGAACTCGGCCGCGTCCACGGTCAGACTGACGTCTTTCAGTTTCTGGTGGATCTCGGTGT 3876 Query 1209 CTGCGCCACTACGCGGCTTGAATGATTTAGCTGCATGGTGGCCGCCCTCCTGGATAGAAA 1268 | || || | || ||| | || || || | || | || | ||| | || Sbjct 3875 CGGCACCGCGGCGGGGCGCGTATTCGCGGGCGGCGTAATGATCTCCTTTCTGCACCGAGG 3816 Query 1269 CGAACCAGCGGTCAGTAAACGCCTGGTAACTGCTGCCGAGGCGTTGGCCCGCATCCAGGA 1328 ||||||||| || || || || |||| ||||||||| || | ||| ||||| | || Sbjct 3815 TGAACCAGCGATCGGTGAAAGCAGTGTAAGAGCTGCCGAGACGCTCGCCGGCATCGACGA 3756 Query 1329 ACCAGCACTGGCCCCACAGGTCTTTCAGGCCATTAGGCGCTGGCGTACCGGTCAGATTAA 1388 ||||| ||| |||||||| ||||| ||||| || || | |||||||||||||||||| | Sbjct 3755 ACCAGTTCTGACCCCACAGATCTTTGAGGCCGTTCGGTGATGGCGTACCGGTCAGATTGA 3696 Query 1389 TGAAGCGCTTAATCTTCTTGTGCGCCACCTTGCCGAGCGCCCGTGCGCGTTTACTACCGC 1448 | |||||||| | ||| | ||| || || | ||| | | ||||| || ||||||| Sbjct 3695 TAAAGCGCTTCACCTTACCGAACGCTACTTTACTGAGTGTCTTCGCGCGCTTGCTACCGC 3636 Query 1449 CACGA----CTACGGAACGACTTCAGCTTGGTGGATTCATCGGCAACAATGACCGTGAAC 1504 | || || |||||||| || ||||| || || || |||||||||||||| ||||| Sbjct 3635 C-GGATTTGCTGCGGAACGATTTAAGCTTCGTCGACTCGTCGGCAACAATGACGGTGAAT 3577 Query 1505 GGCCAGCGGTCACCCCAGAATTCGACGAGCCACTCCAGGATGTCGTAGTTGCAGCACACC 1564 ||||| ||| || | | |||| | ||| || | | || ||||| ||||||| Sbjct 3576 GGCCACGCGTCGCCGTAATAGCCGACCAACCAGTCGATCACCTCATAGTTAACGCACACC 3517 Query 1565 ACGTTTGCGTCATCATTGAGCATCACGTCTTCGCGATACTGGCGGC-----TGCCGGTGC 1619 ||||| || || || || | ||| | | | |||| ||||||||| Sbjct 3516 ACGTTGAAATCGTCGTTCAG--------CGCCGCCAGGCGGTCGGCCTCTTTGCCGGTGC 3465 Query 1620 CGTCGACGACGCGCAGCGCGGGGAATTGCCATTTAGTTTGTTCTGCCGGCCAGGTGCCGG 1679 |||| ||||||||||| ||||| | ||| || ||||| |||||||||||||| | Sbjct 3464 CGTCCACGACGCGCAGGCATGGGAAATCCCACTTCACCTGTTCGGCCGGCCAGGTGCCTG 3405 Query 1680 AGGCGACACGTAAAGGTGCTAAAACAAGAACCCTGTCACCTTTCCAGCTCTCCTGGTCCC 1739 | || || || | || || | | ||| |||| || || || | || |||||| Sbjct 3404 ATGCAACGCGCAGCGGCGCCAGGATAAGCACCCGATCGCCGGTCTGAGTTACCGGGTCCC 3345 Query 1740 AGTCTTCCAGGATGCCGGACTGGAACATCTTGTTCAGTGACCACATCGTTGCGCCTGTGT 1799 | |||||||| | ||| ||||||| |||||| | |||||| || || || || | Sbjct 3344 AATCTTCCAGCTTTGAGGATTGGAACAGGCGGTTCAGCGTCCACATGGTGGCCCCGGTCT 3285 Query 1800 TG 1801 || Sbjct 3284 TG 3283 Score = 87.8 bits (96), Expect = 5e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 4042 AGGCCAGAAGGTCACGGCAAAGCGCCTGCGTGACGTTCTCCGACAACTTGCCGCCGTAGG 4101 ||||||| | ||| ||||| ||||||||| || ||| |||| || |||||||||||||| Sbjct 2278 AGGCCAGCAAGTCGCGGCACAGCGCCTGCACGATGTTTTCCGCCAGCTTGCCGCCGTAGG 2219 Query 4102 TGTACTGTTTTGACCATTGCCGTGTGGTCTGATTCT 4137 || |||| ||| |||||||||||||| |||| Sbjct 2218 TGAACTGCCAGCCCCACTGCCGTGTGGTCTGGTTCT 2183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134963896541988