Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_021777.1 Length=43447 Score E Sequences producing significant alignments: (Bits) Value seq31 545 6e-151 >seq31 Length=5916 Score = 545 bits (604), Expect = 6e-151 Identities = 906/1297 (70%), Gaps = 46/1297 (4%) Strand=Plus/Minus Query 27057 TGCTTTTGCCGTACTGGGCCTATGCGCTCCACAACCTGTAAATAGTGTTCGAGGTTCCAC 27116 ||| | || || || || || || |||||||| | ||| ||||| || | |||||| Sbjct 4488 TGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAGTGCTCAAAGTTCCAT 4429 Query 27117 CCCTGACTGAAAAACGCCATATGATGGCCGCCGTCTTGTAGCGATATGCCGTGCCCGGCT 27176 | |||||||| |||| || || ||||| || || | | |||||| || || Sbjct 4428 GTGTCGCTGAAAAATGCCAGGTGGTGCCCGCCATCCTGCATGTTGAGGCCGTGGCCCGCG 4369 Query 27177 GACGCAGGGTGGACGCATAAGATTTCGATTTCACCACGGTTCCA-CGCTTCCATCTGCTT 27235 ||||| ||||| ||||| ||||||||||| | ||| |||||| |||| | | ||| Sbjct 4368 GACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCAGCGCT-CAACCTGGCG 4310 Query 27236 ATTGCCCTTAGCGCCTTTGGAAAACGCCTGTGCTTGTGGGAATCGCTTAAGGATGCGTTC 27295 || || |||||| || ||| |||| || || ||||| || || | |||||| | Sbjct 4309 GTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCGTTTCAAGATGCGCGC 4250 Query 27296 CAGTTCATGCTTAAACTGATAGGCCACCAGTAACGGCGCACCCTGTAACTCCTCGACAAT 27355 ||| || ||||| ||||||||||||||| | ||| || || ||||| |||| ||| Sbjct 4249 CAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGACAACTCGTCGATAAT 4190 Query 27356 CGACTCAAGCGCGTCCAGTTTCGTGTCGTGCACTTTCTCCCAGTCTTTGGTAG---CCTC 27412 |||||| || |||||||| |||| ||||||||| ||| |||| || ||||| ||| Sbjct 4189 CGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC---GGTAGACCGCTC 4133 Query 27413 ACCATCTGGCCCCGACACATATACGGCGCCGGATGCAATCTGGAGGCATTTCGACGTTTT 27472 || ||| || | |||||| || || ||| || ||||| |||||||| | || Sbjct 4132 GCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAGGCATTTGGCGGTACG 4073 Query 27473 AGCCGCGGCGTTAGCGGCCTCAACTTCTCCGCTCTCCAGTTCCGCGAATAACTTCTCCTC 27532 ||||| ||||| || || || || || ||||| |||||||| ||||||| || ||||| Sbjct 4072 GGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGCGAATAGCTGTTCCTC 4013 Query 27533 CATATCGATGTAGGCTTGGCGCGCTTTCTTCGGCAGGTCAATCTCAACCGGTACAATAAC 27592 ||| || |||| || | |||||| || |||| || | | ||||| || | || Sbjct 4012 CATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGACGACCGGGACGACGAC 3953 Query 27593 CGGCGCTTCACAACCGAACCACTCGGCGGCATCAATGGTCAGGCTGATATCCTTCATCTT 27652 ||| ||||| || || ||||||| || || | |||||| |||| || |||| || Sbjct 3952 AGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACTGACGTCTTTCAGTTT 3893 Query 27653 CTGATGAATCTCGTTATCCGCGCCGGGGCGGGCATGGTACTCCC--GCGCCATAGCCGAT 27710 ||| || |||||| | || || ||| |||||| ||| || | ||| | || ||| Sbjct 3892 CTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGTATTCGCGGGCGGCGTA-ATGAT 3834 Query 27711 TTACCTTTCTGTACTGAATTAAACCATCTGTCGGTGAATGCGGTGTAGGAGGACCCCAGA 27770 | |||||||| || || | ||||| | |||||||| || ||||| ||| || ||| Sbjct 3833 CT-CCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTGTAAGAGCTGCCGAGA 3775 Query 27771 CGCTCACCCGCGTCTATAAACCAGTTCTGGCCCCACAAGTCTTTGAGGCCGTTAGGCGAT 27830 ||||| || || || | ||||||||||| ||||||| |||||||||||||| || ||| Sbjct 3774 CGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTGAGGCCGTTCGGTGAT 3715 Query 27831 GGTGTACCGGTCAGGTTAATGAAACGCTTAACTTTACCGAACGCCACTTTACTAAGCGCC 27890 || ||||||||||| || || || ||||| || ||||||||||| |||||||| || | | Sbjct 3714 GGCGTACCGGTCAGATTGATAAAGCGCTTCACCTTACCGAACGCTACTTTACTGAGTGTC 3655 Query 27891 TTAGCCCGCTTGCTCCCGCCGGAGCGACTACGGAATGATTTCAGTCTGGTGCTTTCATCG 27950 || || |||||||| |||||||| || ||||| ||||| || | || || ||| Sbjct 3654 TTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTAAGCTTCGTCGACTCGTCG 3595 Query 27951 GCAACTATAACCGTAAAAGGCCAGTCGTCTTTGCCATAGTAGTCAATAAGCCATTCGATA 28010 ||||| || || || || ||||| |||| ||| || ||| | | | ||| ||||| Sbjct 3594 GCAACAATGACGGTGAATGGCCACGCGTC---GCCGTAATAGCCGACCAACCAGTCGATC 3538 Query 28011 ACCTCGTAGTTAGTGCATACCACGTT---AGCGTCCGACTCCAGCGCCACGATGCGG--C 28065 ||||| |||||| ||| |||||||| | |||| | ||||||| | | |||| Sbjct 3537 ACCTCATAGTTAACGCACACCACGTTGAAATCGTC---GTTCAGCGCCGCCAGGCGGTCG 3481 Query 28066 GCTTCTCCGAACCCGTAGCATCGATGACACGAAGGCAGGGGAACCCCCATTTCGTTTGTT 28125 || ||| | || || | || | ||| || ||||| ||||| |||| ||| |||| Sbjct 3480 GCCTCTTTG--CCGGTGCCGTCCACGACGCGCAGGCATGGGAAATCCCACTTCACCTGTT 3423 Query 28126 CCGCCGGCCACGTACCCGACGCTACGCGCAAAGGGGCAAGGATTAACACGCGGTC----C 28181 | |||||||| || || || || ||||||| || || ||||| | ||| || || Sbjct 3422 CGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAAGCACCCGATCGCCGG 3363 Query 28182 TCT-----------TCCGTAAGTTGC-CCGTTG-----CGAAACAGGCGGTTAAGCACCC 28224 ||| ||| | || | | ||| | ||||||||||| ||| || Sbjct 3362 TCTGAGTTACCGGGTCCCAATCTTCCAGCTTTGAGGATTGGAACAGGCGGTTCAGCGTCC 3303 Query 28225 ACATCGTCGCGGAACTTTTTCCCGCACCCATCGAAGCCCATATGTTACAGCGTGGGTGCT 28284 |||| || || | || || | ||||| | ||||| | || ||||||||||| Sbjct 3302 ACATGGTGGCCCCGGTCTTGCCGGAGCCCATTGTCGCCCACACATTGCAGCGTGGGTGAC 3243 Query 28285 GCAACATGAACGCCGTCATTAGCTTCTGGTATTCGCG 28321 ||| ||| | ||||||||| || || |||||||| Sbjct 3242 GCAGCATATGCCGCGTCATTAGTTTTTGATATTCGCG 3206 Score = 369 bits (408), Expect = 1e-97 Identities = 691/1006 (69%), Gaps = 22/1006 (2%) Strand=Plus/Minus Query 31004 TAGTACCCGCGCGCCAGGTTCTGTGGCTGGAAGCCTTTGCCAGAAAACCGTAGCGTACGC 31063 ||||||||||||||||||||||| |||||||||||||| || | | || ||||| || Sbjct 1184 TAGTACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGT 1125 Query 31064 TTTGCCCCGCCGTACTGTATGCAACCGCGACGGCGGTCATCCGAAGCGCGAC----CCAG 31119 || ||||| |||||||| | ||| ||||| ||||| | || ||||||| | || Sbjct 1124 TTAGCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTC----GCGCGACAGGCCGAG 1069 Query 31120 CAGCAATGGGCTGTATTTCGTCGATGCGGTGGACGCGGCCCCGAGGCGCATTTCTATAAT 31179 ||||| || |||||| ||||||||||||||||| || || ||||||||||| || | Sbjct 1068 CAGCAGCGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAG 1009 Query 31180 TGCGCGGGCGTCGTCGGGTAAATCCTCATCCGTCAGCAGGTCGTTAAGCGTTGACTTCTG 31239 |||| || ||||| || | || || | |||||||||||| ||||| || ||||| Sbjct 1008 CTCGCGCGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTG 949 Query 31240 TGCGTTGTGTATGCGGTGAGCCGGTGCGAGTTCACGCAGAATCGGGAGGAAATCTTTACC 31299 ||||| | || || ||||| || || || ||||| |||| ||||| || Sbjct 948 CGCGTTCGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCC 889 Query 31300 AGTAAGTGAGCCGCCGTATTTGCGTCG-GGCTTCTTCCTGTAACTGCGCTTTGTGCTTCT 31358 || || || |||||| | | | | ||| || |||| | || ||||| | Sbjct 888 GGTCAGGCCGCTGCCGTA-CTCCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCG 830 Query 31359 CTACGGCTTCAATCGCAGCTTCCGCCAGCGCTACGTCAACCTTAAACCCACGGTCATTGA 31418 ||||| || ||||| || | |||| | ||||| || || || ||||| |||| Sbjct 829 TCACGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGA 770 Query 31419 TTAACTGGTCCAGCTCCAGAACACGGTCTTCGAACTCGGAGTTACCCCA--ACGTGGAAG 31476 | | |||||| || |||| | || || ||||| ||| ||||| || ||| | Sbjct 769 TCAGCTGGTCAAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCG-GGATG 711 Query 31477 C--TTATGGAAGACTTCACGCATCGCGGTGATGTCGCTCACAGCATACTTGATGAACAGC 31534 | | || | || || ||||| | ||||||||| || ||||||||||| Sbjct 710 CGGTAAT---ACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTG 654 Query 31535 GCCCACTCATCCGGATGCGTTTCAGCGGTGTAACGGCGGATTTTGTAGTTCTTCGGCGTC 31594 |||||||| || || ||||| | || ||||| ||||| | ||||| ||| ||||| Sbjct 653 GCCCACTCGTCGGGGTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTA 594 Query 31595 GGCTTAGAGAAACGCCGAATCAGCGCCTTGCCGCGTTTATCTTTCGCGTTGTCTGCGGAT 31654 |||||| |||| || |||||||||||||| || || || |||| ||||| || Sbjct 593 GGCTTACAGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTTGGCGT--TCTGCTCAT 536 Query 31655 --ACGCCCAGCACTTCGCACAGCGCATCAAGTGAACCCGGCAGCGCGTGGCGAAACGCCC 31712 ||||| ||||| ||| || ||||| || |||||||||||||||||| |||||| Sbjct 535 CGACGCCTAGCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCA 476 Query 31713 AAATCATCGTATCAATGGTATTGCTTACCGGAATATCAAAGCCCCAGCAGTGTTTCATGA 31772 ||||| || || | ||||| ||| ||||| |||||||||| | | ||| | Sbjct 475 TGATCATGGTGTCTTCGATATTGGCCGGCGGGATATCGTAGCCCCAGCATTCTCGCATCA 416 Query 31773 TGAGCCTGTCGAACATTGAGCCGTTGTGCCACACCATATTGATACGGCTGTTCGGCTTAA 31832 |||| |||||||| |||||| ||| |||| | | | | | ||| | Sbjct 415 GCAGCCGGTCGAACAGCAGGCCGTTCTGCATTACCAGTCGGCTTTCGGTATCGGGCCTCG 356 Query 31833 CCAAGCGGCGTAGCGCTCGGTGCAAATCCCCTGGCATGTCACTGCCATCGGTGCAATCCC 31892 ||| ||| ||||| || | || || | |||||| ||||| |||||| |||| Sbjct 355 CCAGTTCGCGCAGCGCACGTTTCAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCC 296 Query 31893 ACACCCGCACAGGCTCGTCATCAAAAGCATAGGTACAGATAAGCACTTCGGTGGTTGGGT 31952 | ||| |||| || || || || || ||| | ||||| | | |||||| | | ||| Sbjct 295 ATACCTGCACCTTTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGT 236 Query 31953 GTTCGGCGTAAGCGTAGGAGCCGACTTTCTTTAAATCGGCTTCGGA 31998 |||| || || || |||| |||| ||| || || ||||||||||| Sbjct 235 GTTCCGCATACGCATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGA 190 Score = 253 bits (280), Expect = 6e-63 Identities = 447/642 (70%), Gaps = 17/642 (3%) Strand=Plus/Minus Query 30350 CCCGGGTTGCGGATAGCTGCCATAGCCGCATCTTCAATATCTCGCCAGAAAGCTACGGTT 30409 ||||| || ||| || ||| ||||| ||||||| ||| ||||||| || || || Sbjct 1910 CCCGGATTCTTGATCGCCGCCTGCGCCGCGTCTTCAAGATCCTGCCAGAATGCCACTGTC 1851 Query 30410 TCCGGGTGGGACTCACGCCACATGCGTTTGATAGCGTCACAGGTACGCCACACTTTCTTA 30469 |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||| || Sbjct 1850 TCCGGGTGCGACTCGCGCCACATGCGCTTGATAGCGTCGCAGGTCATCCACACCTTGCGC 1791 Query 30470 TCAAGAATATATGATGGTCGGTCGTCTTTTTCACCCG--GCCGCGGAGGTCGCTTGG-CT 30526 || || |||||||||||| |||| | ||| | |||| ||||| || Sbjct 1790 GGCAGGTCGTACGATGGTCGGTCGGCTTTCTTGCCCTTTGGCGCG-----CGCTTATTCT 1736 Query 30527 TC--CTGAATACGCGCCCATTCATATCCACGCGCG-GTAGCGGCCCAGATGTGGTCGGGG 30583 || |||||| || || |||| | || || ||| | |||||||| ||||| || ||| Sbjct 1735 TCTCCTGAATGCGGGCGAATTCGAAGCCGCG-GCGCGCGGCGGCCCAAATGTGATCCGGG 1677 Query 30584 AAAGTACCGTCCATTGTTTTAGCCATATCAACAAGGTCAAGGCCGAGGGTCTTAGCAAAC 30643 || || || ||||| || ||||| | ||||| ||||||||| | || || ||| Sbjct 1676 AATGTGCCATCCATGTCTTGCGCCATCTGGTACAGGTCGAGGCCGAGGTTTTTGGCGAAC 1617 Query 30644 TGAACGAAAGCACCTACACCGCCCGCGTAGCCGAGTCCCAGTTCGCAGGCCTTACCAATC 30703 || | ||| || | || ||||| |||| || || || |||||||||||||| || ||| Sbjct 1616 TGCAGGAACGCCGCCACCCCGCCGCCGTACCCCAGGCCGAGTTCGCAGGCCTTGCCGATC 1557 Query 30704 TGGCGTAAGTCTTTACGTTCTTTCTTAATGTAATCCGGCTCCATGCCGAACATCTTACCT 30763 || |||| |||||| || | | ||| || | | || || | || ||||||||| || Sbjct 1556 TGCCGTAGGTCTTTGCGATTCTCCTTGATAAAGCCGGGGTCGAGGCGGAACATCTTGCCG 1497 Query 30764 GCTGTTACGCAGTAAATATCCAG---CCCGGCACGGAACGTATCTAGCGCGGTTTCTTCC 30820 || ||| ||||||| || || | | | ||| || || || || | ||| Sbjct 1496 GCCGTTTCGCAGTAGATGTCGCGTTTTTTGTCGGAGAAGACGTCCAGAGCTGTATGTTCG 1437 Query 30821 CCCGCCAGCCACGCAAGCCCTCGGCCCTCGACGTTAGAGTAATCGGCGACGACAAACTTA 30880 |||| | ||| || ||||| || || || ||||| || || ||||| || || || ||| Sbjct 1436 CCCGAAATCCAGGCCAGCCCGCGCCCTTCCACGTTTGAATAGTCGGCAACAACGAATTTA 1377 Query 30881 TGTCCTTCTTCCGGTATGATGCAGCTTCGAACCGTAGATGCCGTTAACTTAGCTACATCG 30940 | |||| ||| || | ||||| ||| || || | ||| | | ||| ||||| ||| Sbjct 1376 TTACCTTTTTCAGGGACAATGCATGATCGCACGGTGGTTGCGGCCAGCTTGGCTACGTCG 1317 Query 30941 AAACGGCGGTGCGCCCTGCCCTTAAGTAAC-GCTGAAATGCC 30981 ||||| || ||||| | ||| || || | | |||| |||||| Sbjct 1316 AAACGTCGATGCGCGCGGCCTTTCAGCAGCTGCTG-AATGCC 1276 Score = 84.2 bits (92), Expect = 6e-12 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 29240 TATAATAGTGTTCTATTAATTTATCAACCTGTTTCTTCGACCCGACAACAAAAACATTCG 29299 ||||||||| | | |||| | |||||||| || ||||| ||| ||||| | Sbjct 2754 TATAATAGTTTGCGATTAGGCTGTCAACCTGCGATTTGCTGCCGACGGTAAACACATTGG 2695 Query 29300 CGCCACGCTTTCTAAGCCGCTCGTGCTCCCGTAACTGGTGTGGGTCCGGCTTCGTGTTTT 29359 |||| |||||| | || |||||||| ||| |||||| ||||| | ||| | Sbjct 2694 CGCCGCGCTTTTGCATGCGTTCGTGCTCGCGTGCCTGGTGCGGGTCTGTGCCGGTGGCCT 2635 Query 29360 CATTTTTCTTAACCTCGACGAACCATATGATGCCGCCGGGGAGAATTACCAGCAGGTCAG 29419 | | |||||| |||||||||||||| | || ||| | || |||| |||||||| || | Sbjct 2634 CGTCTTTCTTCACCTCGACGAACCACACGACGCCTCTCGGCAGAAGCACCAGCAGATCGG 2575 Query 29420 G 29420 | Sbjct 2574 G 2574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138906223415396