Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1526 104 2e-17 seq1419 100 3e-16 seq1399 91.5 1e-13 seq652 87.8 2e-12 seq1101 82.4 7e-11 >seq1526 Length=386723 Score = 104 bits (114), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| || || | Sbjct 246309 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTAGAAGTCGAGGCTTCG 246250 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| |||||||| || Sbjct 246249 GACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAG 246190 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCA--GATTAT 24880 || ||| | ||||| || || || ||||| ||||| || ||| | | ||| || || Sbjct 246189 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGA--CG-GAAGGACTCTCAGCGACTAC 246133 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || |||||||| || || || |||| Sbjct 246132 AACATCCAGAAGGAATCCACGCTCCATCTGGT 246101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || ||||| || || || || || ||||| || || | Sbjct 247610 ATGCAAATCTTCGTGAAAACTCTGACCGGAAAGACGATCACCCTGGAAGTCGAGGCTTCG 247551 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| |||||||| |||||||| || Sbjct 247550 GACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCCGACCAG 247491 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||| | ||||||||||| || Sbjct 247490 CAGCGTCTTATCTTTGCCGGTAA 247468 >seq1419 Length=601844 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| ||||| || || ||||| | || || || | || Sbjct 537976 ATGCAAATCTTCGTCAAGACGCTGACCGGAAAGACGATTACCTTGGAGGTTGAGGGATCC 538035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || || || || || || || || Sbjct 538036 GACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAG 538095 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || ||||| |||||| | | || || || ||| Sbjct 538096 CAGCGATTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGAGTGACTACAAC 538155 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || || || || |||||||| | || | || |||||| Sbjct 538156 ATCCAAAAAGAGTCAACCCTCCACTTGGTCCTCCGTCTCCGTGGAGGC 538203 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| || || || || | | Sbjct 538204 ATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATTACCCTGGAGGTCGAGGGGTCT 538263 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| |||||||| || Sbjct 538264 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAG 538323 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || || || ||||| |||| | | || || ||| Sbjct 538324 CAGCGCCTTATCTTCGCTGGCAAGCAACTCGAGGACGGAAGAACCCTCAGCGACTACAAC 538383 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || ||||| || |||||||| | || | || |||||| Sbjct 538384 ATCCAAAAAGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGTGGAGGC 538431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || ||||| || || || || || || Sbjct 537748 ATGCAAATCTTCGTCAAGACTCTCACGGGGAAGACCATTACCCTTGAGGTTGAGGCTTCC 537807 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| || || || ||||||||||| Sbjct 537808 GACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 537867 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || |||||||| ||||| || ||||| || || Sbjct 537868 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGA 537902 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || | | Sbjct 538935 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAGGTCGAGGGATCT 538994 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| |||||||| ||||||||||| Sbjct 538995 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGATCAG 539054 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| || || | | | | || || ||| Sbjct 539055 CAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAAC 539114 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| ||||| || ||| Sbjct 539115 ATCCAGAAGGAGTCGACCCTCCAC 539138 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 538432 ATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATCACTCTTGAGGTCGAGGGGTCT 538491 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || || || || || || || || Sbjct 538492 GACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAG 538551 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || || |||||||||||||| || ||| |||| ||| | | | ||| || || | Sbjct 538552 CAGCGATTGATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCA--CTCTCAGCGACTACA 538609 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| || ||||| ||||| || |||||||| | || | || |||||| Sbjct 538610 ACATACAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGTGGAGGC 538659 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || ||||| || || || || | | Sbjct 538660 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACGATTACTCTTGAGGTTGAGGGATCT 538719 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| |||||||| || Sbjct 538720 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAG 538779 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || | ||||||||||| || Sbjct 538780 CAGCGCCTTATCTTTGCCGGTAA 538802 >seq1399 Length=49110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || ||||| || | || || || || || ||| | Sbjct 13478 GATGCAAATCTTCCTCAAGACCCTCACGGGTAAGACCACCACTCTTGAGGTCGAGGCCTC 13419 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| ||||| |||||| ||||| ||||| || ||||||| || Sbjct 13418 TGACACTATCGAAAATGTAAAGGTCAAGATCTTTGACAAGGAAGGCATTCCTCCCGGCCA 13359 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 || || ||||| ||||||||||||||||| Sbjct 13358 GCAGCGCTTGATTTTTGCCGGGAAACAGCT 13329 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || ||||| ||||| || || || || || ||| | Sbjct 13940 GATGCAAATCTTCCTCAAGACCCTCACGGGTAAGACTATCACTCTTGAGGTCGAGGCCTC 13881 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| ||||| |||||| |||| ||| | || ||||||| | Sbjct 13880 TGACACTATCGAAAATGTAAAGGTCAAGATCTTTGACAGGGAAAGCATTCCTCCCGGCCG 13821 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 ||||| ||||| || |||||||||||||| Sbjct 13820 GCAACGCTTGATGTTCGCCGGGAAACAGCT 13791 >seq652 Length=32697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || |||| | Sbjct 6662 ATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGTTCT 6721 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 6722 GACTCGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 6781 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || ||| | ||||| || || || ||||| ||||| || | ||| || || | Sbjct 6782 CAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGA--CGGCCGGACTCTCAACGACTACA 6839 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || ||||| || || || || ||||| ||||| | ||||| || Sbjct 6840 ACATCCAGAAGGAGTCCACGCTTCATTTGGTTTTGCGCCTTCGCGGTGG 6888 >seq1101 Length=331277 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | ||||| || || || || ||||| || || ||| || Sbjct 90817 ATGCAGATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTCC 90876 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || |||||||| ||||| || || Sbjct 90877 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCTCCAGACCAG 90936 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||||||||| || Sbjct 90937 CAGCGCCTGATCTTTGCCGGTAA 90959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888815749360