Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_022754.1 Length=42749 Score E Sequences producing significant alignments: (Bits) Value seq31 610 2e-170 >seq31 Length=5916 Score = 610 bits (676), Expect = 2e-170 Identities = 868/1211 (72%), Gaps = 19/1211 (2%) Strand=Plus/Minus Query 23915 CGCGCGGCAACGACCTCATCCAGCGTGTCTTTAGCGACTATGTGATACAGGAACACTGGA 23974 || ||||| | || || ||||||||| | || || || | || | |||||| || Sbjct 4563 CGGGCGGCCAGCACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGG 4504 Query 23975 CGCTCGTGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAG 24034 ||| ||| || ||||| ||||||| || ||||| |||||||| || | |||| ||| Sbjct 4503 CGCGGGTGACCGGCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAG 4444 Query 24035 TGCTCCAGGTTCCA-GCCTTGCGAAATAAACGCCAGATGATGCCCGCCGTCCTGTAAATT 24093 ||||| | |||||| | | || || ||| ||||| || |||||||| ||||| | || Sbjct 4443 TGCTCAAAGTTCCATGTGTCGCTGAA-AAATGCCAGGTGGTGCCCGCCATCCTGCATGTT 4385 Query 24094 CAAACCATGGCCCGCCGATGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCA 24153 | || |||||||| || || ||||| |||||||| || ||||| | || |||||| Sbjct 4384 GAGGCCGTGGCCCGCGGACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCA 4325 Query 24154 AGCTTCCATCTGCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCG 24213 || | ||| ||||| ||| || || ||| |||||||||| ||||| || Sbjct 4324 GCGCTCAACCTGGCGGTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCG 4265 Query 24214 CCTAAGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCACCCTG 24273 | | |||||| | || ||||||||| ||||||||||||||| |||||| || || Sbjct 4264 TTTCAAGATGCGCGCCAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGA 4205 Query 24274 CAACTCCTCGACAATGGACTCTAACGCATCGAGTTTCGCGTCGTGCACTTTCTCCCAGTC 24333 |||||| |||| ||| ||||| | || || || |||||||||||||| ||| |||| || Sbjct 4204 CAACTCGTCGATAATCGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC 4145 Query 24334 TTTCGTTGCTTCACCGTCCGGCCCTGACACATACACGGCACCGGAAGCAATCTGCAAGCA 24393 | | || ||||| || | ||||||||| || ||| || ||||||| ||| Sbjct 4144 GGTAGACCGCTCGCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAGGCA 4085 Query 24394 CTTAGCCGTTTTAGCGGCGGCGTTAGCCGCTTCAACTTCTCCGCTCTCCAGTTCCGCGAA 24453 || || || || || ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 4084 TTTGGCGGTACGGGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGCGAA 4025 Query 24454 TAACTTCTCCTCCATATCGATGTAGGCTTGACGCGCTTTCTTCGGCAGGTCAATCTCAAC 24513 || || |||||||| || |||| || | ||||| || |||| || | | || Sbjct 4024 TAGCTGTTCCTCCATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGACGAC 3965 Query 24514 CGGTACAATAACCGGCGCTTCACAACCGAACCACTCGGCGGCATCAATGGTAAGGCTGAT 24573 ||| || | || ||| ||||| || || ||||||| || || | ||| || |||| Sbjct 3964 CGGGACGACGACAGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACTGAC 3905 Query 24574 ATCCTTCATCTTCTGGTGAATCTCGTTATCCGCGCCGGGGCGAGCATGGTACTCCCGCGC 24633 || |||| |||||||| |||||| | || || ||| |||| | ||| || || | Sbjct 3904 GTCTTTCAGTTTCTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGTATTCGCG-GG 3846 Query 24634 CATCGCA--GATTTGCCTTTCTGTACCGAGTTAAACCATCTATCGGTAAAGGCCGTGTAT 24691 | || | ||| | |||||||| |||||| | ||||| | |||||| || || ||||| Sbjct 3845 CGGCGTAATGATCT-CCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTGTAA 3787 Query 24692 GAAGACCCCAGGCGCTCGCCAGCGTCGATAAACCAATTCTGGCCCCACAAGTCTTTGAGG 24751 || || || |||||||| || |||| ||||| ||||| ||||||| ||||||||| Sbjct 3786 GAGCTGCCGAGACGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTGAGG 3727 Query 24752 CCGTTTGGCGATGGTGTCCCAGTCAGGTTAATGAAACGCTTAACCTTTCCGAACGCCACT 24811 ||||| || ||||| || || ||||| || || || ||||| ||||| |||||||| ||| Sbjct 3726 CCGTTCGGTGATGGCGTACCGGTCAGATTGATAAAGCGCTTCACCTTACCGAACGCTACT 3667 Query 24812 TTGCTAAGGGCCTTTGCCCGCTTGCTACCACCAGAACGGCTGCGGAATGATTTAAGCTTC 24871 || || || | ||| || ||||||||||| || || ||||||||| |||||||||||| Sbjct 3666 TTACTGAGTGTCTTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTAAGCTTC 3607 Query 24872 GTGCTTTCATCGGCAACGATAACGGTAAAAGGCCAGTCGTCTTTGCCGTAGTAGTCAATC 24931 || || |||||||| || ||||| || ||||| |||| |||||| ||| | | | Sbjct 3606 GTCGACTCGTCGGCAACAATGACGGTGAATGGCCACGCGTC---GCCGTAATAGCCGACC 3550 Query 24932 AGCCATTCGATAACTTCGTAGTTAGTGCATACCACGTT---AGCGTCTGACTCCAGCGCC 24988 | ||| ||||| || || |||||| ||| |||||||| | |||| | ||||||| Sbjct 3549 AACCAGTCGATCACCTCATAGTTAACGCACACCACGTTGAAATCGTC---GTTCAGCGCC 3493 Query 24989 GCTATGCGG--CGCTTCTCCGAACCGGTTGCATCGATGACACGAAGGCACGGGAAATTCC 25046 || | |||| || ||| | ||||| | || | ||| || ||||| ||||||| || Sbjct 3492 GCCAGGCGGTCGGCCTCTTTG--CCGGTGCCGTCCACGACGCGCAGGCATGGGAAATCCC 3435 Query 25047 AACGTGCCTGTTCCGCGGGCCACGTACCGGACGCAACACGTAAAGGAGCCAGAATTAACA 25106 | ||||||| || ||||| || || || ||||| || | || ||||| || | || Sbjct 3434 ACTTCACCTGTTCGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAAGCA 3375 Query 25107 CTCGGTCGTCG 25117 | || ||| || Sbjct 3374 CCCGATCGCCG 3364 Score = 390 bits (432), Expect = 3e-104 Identities = 699/1017 (69%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 28685 TAATATCCGCGCGCCAGGTTCTGAGGCTGAAAACCTTTCCCGGCCCATCGCAGTGTTCGC 28744 || || ||||||||||||||||| ||||| || ||||| |||||||| ||||| || || Sbjct 1184 TAGTACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGT 1125 Query 28745 TTCGCTCCGCCGTATTGCAGACAACCTCGACGGCGGTCATCGGAAGAACGACCTAACAGC 28804 || || || ||||| ||||| || || || ||||| | ||| || | || | |||| Sbjct 1124 TTAGCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTCGCGCGACAGGCCGAGCAGC 1065 Query 28805 AACGGTGCGTATTTCGTTGATGCAGTGGACGCGGCCCCCAGACGCATTTCAATGATCATG 28864 | ||| |||||||| || ||||| |||||||| || ||||| |||||||| || | | | Sbjct 1064 AGCGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCG 1005 Query 28865 CGGGCGTCGTCCGGTAAATCCTCGTCGGCTAACAGGTCGTTAAGCGTCGACTTCTGCGCG 28924 || || |||||||| | || |||||| | ||||||||| |||||||| ||||||||| Sbjct 1004 CGCGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCG 945 Query 28925 TTGTGGATGCGGTGCGCCGGTGCTAGTTCCTGTAAAATAGGCAGGAAGTCTTTGCCGGTT 28984 || |||| |||||||| || || || | | | ||||||||| ||||| Sbjct 944 TTCGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTC 885 Query 28985 AGTGAACCGCCATATTTGCGTTG--GGCTTCTTCCTGTAACTCTTCTTTATGGCGCGTCA 29042 || | ||| || | | ||| ||| || |||| | ||||| || |||||||||| Sbjct 884 AGGCCGCTGCCGTACT--CCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCGTCA 827 Query 29043 CCGCTTCAATTGCACTCTCGGCGAGGGCAACATCGACCTTAAATCCACGGTCATTAATTA 29102 | || || || || || ||| | | | || || || || || ||||| || || | Sbjct 826 CGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGATCA 767 Query 29103 CCTGGTCCAGATGAAGCACGCGGTCTTCGAACTCAGAATTCCCCCACTTAGGCATTTTCT 29162 |||||| || || | || || ||| | || ||||| | || || | Sbjct 766 GCTGGTCAAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGGT 707 Query 29163 TATACACTTCACGCATGGACGTAATGTCGCTTTTTGCGTATGCAATAAATTCTGCCCACT 29222 |||||| || ||||||||| |||||||| ||||| || |||| ||||||| Sbjct 706 AATACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCACT 647 Query 29223 CTTTTGGGTGGGTATCGGCAGTATAACGTCGAATCTTATAGTTCTTGGGCGTAGGCTTAC 29282 | | ||||| ||| |||| || || || || | ||| || ||| ||||||||||||| Sbjct 646 CGTCGGGGTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTAC 587 Query 29283 TGAATCGCTGTATCAGCGCCTTACCGCGTTTATCCTTAGC--CATGCTTGCGTCAATGTT 29340 ||| || | ||||||||||| || || ||||| || |||| | || | | Sbjct 586 AGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTTGGCGTTCTGCT--CATCGACGCC 529 Query 29341 TAAAACCTCACACAGCGCGGCCAGTGAACCCGGGAGGGCATGTCGGAACGCGACTATCAT 29400 || || || || || |||| |||||| || || || |||||||| | ||||| Sbjct 528 TAGCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCAT 469 Query 29401 AGTGTCTATAATGTTTTCTACCAGGAGTTCGAATCCCCAGCAATGCTTAATAACTGGTCG 29460 |||||| || || | | ||| ||| | |||||||| | || | | || Sbjct 468 GGTGTCTTCGATATTGGCCGGCGGGATATCGTAGCCCCAGCATTCTCGCATCAGCAGCCG 409 Query 29461 GTCGAACATAAGGAAGTTTTGGCCTACCAGTTTGAGATTGCTGTCTGGTTTTTGCAGCTT 29520 |||||||| ||| ||| || ||||||| | | | | || || | ||| | Sbjct 408 GTCGAACAGCAGGCCGTTCTGCATTACCAGTCGGCTTTCGGTATCGGGCCTCGCCAGTTC 349 Query 29521 TAGCATCGCCCGACGCAAATCACGCGGCATATCGCTGCCGTCGGTGGCGTCCCATACTTG 29580 ||| ||| || || || |||||||| |||||||||||||||||||||||| || Sbjct 348 GCGCAGCGCACGTTTCAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCCATACCTG 289 Query 29581 CACAGGGCCTTCATCGAAAGCGTAGGTGCAGATAACAATTTCGGTAGTCGGATGTTCGGC 29640 ||| | || ||||| |||||| ||||||| | |||||||||| | ||||| || Sbjct 288 CACCTTTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGTGTTCCGC 229 Query 29641 GTAAGCATAGGAACCGACtttttttAAATCGGCTTCTGAAAATGTTTCAGTATCGAG 29697 || ||||||| ||| |||||| || |||||||| ||| | || || |||||||| Sbjct 228 ATACGCATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGAATACGTCTCGGTATCGAG 172 Score = 199 bits (220), Expect = 1e-46 Identities = 406/594 (68%), Gaps = 7/594 (1%) Strand=Plus/Minus Query 28059 CGTCTTTAAGGTCGCGCCAGAACGCTACAGTTTGCGGGTGCGATTCACGCCACATACGTT 28118 |||||| ||| || ||||||| || || || | ||||||||| || |||||||| || | Sbjct 1882 CGTCTTCAAGATCCTGCCAGAATGCCACTGTCTCCGGGTGCGACTCGCGCCACATGCGCT 1823 Query 28119 TAATGGCATCACATGTACGCCATACTTTCTTATCGAGAATATACGATGGACGGTCATCCT 28178 | || || || || || ||| || || || |||||||| ||||| | | Sbjct 1822 TGATAGCGTCGCAGGTCATCCACACCTTGCGCGGCAGGTCGTACGATGGTCGGTCGGCTT 1763 Query 28179 TCTCCCCCGGACGCGGCGGCCGTTTTGCCTCCTGTATCCGCGCCCACTCATACCCGCGAG 28238 ||| ||| ||| || || |||||| || || || | || | ||||| | Sbjct 1762 TCTTGCCCTTTGGCGCGCGCTTATTCTTCTCCTGAATGCGGGCGAATTCGAAGCCGCG-G 1704 Query 28239 CG-GTAGCGGCCCAGATATGGTCGGGGAAAGTTCCGGCCATTGTTTTG-GCCATCTCAAT 28296 || | |||||||| || || || ||||| || || |||| || ||| ||||||| Sbjct 1703 CGCGCGGCGGCCCAAATGTGATCCGGGAATGTGCCATCCAT-GTCTTGCGCCATCTGGTA 1645 Query 28297 AAGGTCAAGACCTAAGTTTTTGGCGAATGTAACGAACGCTCCGACGCCACCCTCATAGCC 28356 ||||| || || | |||||||||||| | |||||| | || || || | || || Sbjct 1644 CAGGTCGAGGCCGAGGTTTTTGGCGAACTGCAGGAACGCCGCCACCCCGCCGCCGTACCC 1585 Query 28357 TAGGCCAAGCTCGCAAGCTTTGCCTATCTGTCTGATATCTTTAAAGTTTTTCTTAATATC 28416 ||||| || ||||| || ||||| ||||| | | ||||| || | ||| ||| Sbjct 1584 CAGGCCGAGTTCGCAGGCCTTGCCGATCTGCCGTAGGTCTTTGCGATTCTCCTTGATAAA 1525 Query 28417 ATCTGGATCCATGCCGAACATCTTTCCTGCCGTTACGCAGTATATATCAAGACCCGCG-C 28475 | || || | || ||||||||| || |||||| ||||||| || || | | | Sbjct 1524 GCCGGGGTCGAGGCGGAACATCTTGCCGGCCGTTTCGCAGTAGATGTCGCGTTTTTTGTC 1465 Query 28476 GGA-AAG-TATCAAGAGCTGTTTCTTCCCCGGACAGGAAGGCAAGCCCTCGCCCTTCAAC 28533 ||| ||| || |||||||| | ||| || || | |||| ||||| |||||||| || Sbjct 1464 GGAGAAGACGTCCAGAGCTGTATGTTCGCCCGAAATCCAGGCCAGCCCGCGCCCTTCCAC 1405 Query 28534 GTTGGAATAGTCCGCAACAACAAACTTATGTCCGGCTTCCGGAATAATGCAGCTTCTGAC 28593 ||| |||||||| |||||||| || |||| || ||| || | |||||| || || Sbjct 1404 GTTTGAATAGTCGGCAACAACGAATTTATTACCTTTTTCAGGGACAATGCATGATCGCAC 1345 Query 28594 GGTAGACGCCGTTAGCTTGGCCACATCAAAACGGCGGTGTGCACGGCCTTTAAG 28647 ||| | || | |||||||| || || ||||| || || || |||||||| || Sbjct 1344 GGTGGTTGCGGCCAGCTTGGCTACGTCGAAACGTCGATGCGCGCGGCCTTTCAG 1291 Score = 107 bits (118), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 26538 TATAATAGTGTTCTATTAATTTATCAACCTGT--TTAGACGAACCAACAACAAAAACATT 26595 ||||||||| | | |||| | |||||||| || | | || || ||| ||||| Sbjct 2754 TATAATAGTTTGCGATTAGGCTGTCAACCTGCGATTTGCTG--CCGACGGTAAACACATT 2697 Query 26596 CGCGCCGCGTTTACGCATCCGCTCGTGCTCCCGTAACTGGTGCGGGTCTGGCTTCGTGTT 26655 |||||||| || |||| || |||||||| ||| |||||||||||||| ||| Sbjct 2696 GGCGCCGCGCTTTTGCATGCGTTCGTGCTCGCGTGCCTGGTGCGGGTCTGTGCCGGTGGC 2637 Query 26656 TTCGTCTTTCTTAACCTCGACAAACCAGATGACGCCGCGTGGGAGAATTACCAGCAGGTC 26715 ||||||||||| |||||||| ||||| | |||||| | || |||| |||||||| || Sbjct 2636 CTCGTCTTTCTTCACCTCGACGAACCACACGACGCCTCTCGGCAGAAGCACCAGCAGATC 2577 Query 26716 TGGGGCGCC 26724 ||||| || Sbjct 2576 -GGGGCACC 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136672664845884