Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq31 486 5e-133 >seq31 Length=5916 Score = 486 bits (538), Expect = 5e-133 Identities = 881/1268 (69%), Gaps = 32/1268 (3%) Strand=Plus/Minus Query 15420 TTTTTGCGT-TTCATATAGTCCATTAACAGGTCTTGCACTTCGGCCTTGTCGTCGCGCCG 15478 ||| | ||| ||||| |||||||| | ||| || || || | ||| || ||||| || Sbjct 4621 TTTCTTCGTCTTCATGTAGTCCATCAGCAGATCCTGTACGCTGCGCTTATCCTCGCGGCG 4562 Query 15479 CAGGGCGACAACCTCATCAAGTGTTCCGCGTGCCTGAATGATGTATATGTATACCGTGCG 15538 ||| | || || || || || || ||||| || | ||| ||| | |||| ||| Sbjct 4561 GGCGGCCAGCACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGGCG 4502 Query 15539 CGGGTGCCCGGCTTGGTGCTGGCGGACGGGGCCGATACGCTCGACGATCTGCGCATATTG 15598 |||||| ||||| || |||||| || || ||||||||||| ||||||||||| || || Sbjct 4501 CGGGTGACCGGCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAGTG 4442 Query 15599 CTCATAGTTCCACGTATCGTTGAAAAAGGCCAGATGGCACCCGCCGTCCTGCAAGTTCAG 15658 |||| ||||||| || ||| ||||||| ||||| ||| |||||| ||||||| ||| || Sbjct 4441 CTCAAAGTTCCATGTGTCGCTGAAAAATGCCAGGTGGTGCCCGCCATCCTGCATGTTGAG 4382 Query 15659 GCCATGGCCCGCGCTGGCTGGATGCACGAACATGATCGGCACCTTGCCGGCGTTCCAATC 15718 ||| ||||||||| || || || ||| ||| ||| | || || |||||| | Sbjct 4381 GCCGTGGCCCGCGGACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCAG-C 4323 Query 15719 GGCCA---TGTCATTGTTGCCCTTTAACCCCTTGCGCATCGCGCGGCCCTGCGGGAAGCG 15775 | || || | ||| || ||||| | | | | |||||||||| || Sbjct 4322 GCTCAACCTGGCG--GTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCG 4265 Query 15776 TTTTAGCAGGCGCACCAGGTCGTGTTTATACTGGTACGCGACTAGCAACGGGCTGCCGTT 15835 ||| | | |||| |||||||||| || ||||| || || || | || |||| |||| Sbjct 4264 TTTCAAGATGCGCGCCAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGA 4205 Query 15836 TAGCTCCTCGATGATGGATTCCAGCGCGTCGAGCTTGGCCTTGTGGATTTCCGTCCACTC 15895 | ||| ||||| || || ||||| ||||| ||||| || | ||| | | || |||||| Sbjct 4204 CAACTCGTCGATAATCGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC 4145 Query 15896 TTTGGATGCCTCGCCATCGTCGGTCGTGATGTAACAGGCGCCGCCCGCGATCTGTAAACA 15955 | || |||||| || ||| || | || || |||| |||||||| | || Sbjct 4144 GGTAGACCGCTCGCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAGGCA 4085 Query 15956 CTTGGCCGTTTTTGCCGCCGCGTTCGAGGCCTCGATTTCGCCGCTTTCCAATTCAGCGAA 16015 ||||| || ||||||||||| | || |||| |||||||| |||| ||| ||||| Sbjct 4084 TTTGGCGGTACGGGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGCGAA 4025 Query 16016 AAGCGCGTTTTCCATATCGTCGTAGATCTTGCGCGCTTTCTTCGGCAACTCGACTACGAT 16075 ||| | ||||| || | ||| ||||||||| || |||| ||||| |||| Sbjct 4024 TAGCTGTTCCTCCATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGACGAC 3965 Query 16076 CGGTACGACTACCGGCTTATCACACCCGAAATACTCCGCCGCGTCGATCGTGATGCTGAG 16135 ||| ||||| || ||||| ||||| || || |||| |||||||| | || | |||| Sbjct 3964 CGGGACGACGACAGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACTGAC 3905 Query 16136 GTCCGCGCACTTCTGGTGGATCTCGGTTTCCGCCCCGGTGCGTGGCG-ATATCTGGCGCG 16194 ||| ||||||||||||||||| || || ||| ||| |||| ||| | ||| | Sbjct 3904 GTCTTTCAGTTTCTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGTAT-TCGCGGG 3846 Query 16195 CAAGTGGTGACGAGCCGACTTGCT-TACTGA--CGAACCAGCGATCTGAGAATG-ATTGA 16250 | | || | || | ||| || || || |||||||||||| | ||| | | || Sbjct 3845 C--GGCGTAATGA-TCTCCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTG- 3790 Query 16251 TAACTGGTGCCAAGGCGCTCGCCCGCATCGAGAAACCACATCTGCCCCCACACGTCCTTT 16310 ||| | |||| || |||||||| ||||||| ||||| |||| ||||||| || || Sbjct 3789 TAAGAGCTGCCGAGACGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTG 3730 Query 16311 AAGCCGTTCGGCGCTGGCGTACCGGTCAGATTGATAAACCTGCGGATTTTCTTA---TGC 16367 | ||||||||| | |||||||||||||||||||||||| ||| | |||| | Sbjct 3729 AGGCCGTTCGGTGATGGCGTACCGGTCAGATTGATAAA---GCGCTTCACCTTACCGAAC 3673 Query 16368 GCCACTTTCGCCAATGCGCGGGCCCGCTTGCTACCGCCG---CGGCTACGATACGATTTT 16424 || ||||| | || || ||||||||||||||| ||| || ||||||| Sbjct 3672 GCTACTTTACTGAGTGTCTTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTA 3613 Query 16425 AACCGCGTGCTTTCATCGGCAACTACGACAGTAAACGGCCAATCGTTGCCGTAATACTCG 16484 | | ||| || |||||||| | ||| || || ||||| ||| ||||||||| || Sbjct 3612 AGCTTCGTCGACTCGTCGGCAACAATGACGGTGAATGGCCACGCGTCGCCGTAATAGCCG 3553 Query 16485 ACCAGCCATTCCAGCACGTCGTAATTCAGGCATACCACATT--CGCCGATGTTGCCAGTG 16542 |||| ||| || | ||| || || || | ||| ||||| || || ||| ||| | Sbjct 3552 ACCAACCAGTCGATCACCTCATAGTTAACGCACACCACGTTGAAATCGTCGTT--CAGCG 3495 Query 16543 CCTCGATCCGGTGCTCGGCGTTACCGGTGGCATCGATAACCCGCA-GCGCGGGAAATTTC 16601 || | | |||| | | || |||||| | || | || |||| || |||||| | | Sbjct 3494 CCGCCAGGCGGTCGGCCTCTTTGCCGGTGCCGTCCACGACGCGCAGGCATGGGAAA-TCC 3436 Query 16602 CACTTGCGCTGTTCCTCCGGCCAAGTGCCAGACGCAACGCGCAACGGGGCGAGGATCAGA 16661 ||||| |||||| ||||||| ||||| || |||||||||| ||| || ||||| || Sbjct 3435 CACTTCACCTGTTCGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAAGC 3376 Query 16662 ACGCGATC 16669 || ||||| Sbjct 3375 ACCCGATC 3368 Score = 446 bits (494), Expect = 5e-121 Identities = 595/813 (73%), Gaps = 18/813 (2%) Strand=Plus/Minus Query 19580 TACCCGCGTGCCAGGTTCTGCGGCTGAAAGCCCTTGCCCGCCCAACGGAGTGTGCGTTTG 19639 |||||||| ||||||||||||||||| ||||| || || ||||| || || |||||||| Sbjct 1181 TACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGTTTA 1122 Query 19640 GCGCCGCCATATTGCAGGCACCCGCGGNNNNNNNNNNNNGCG-GACATACCATTAAGCAG 19698 || || || || ||||||||||||||| ||| |||| || ||||| Sbjct 1121 GCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTC-GCGCGACAGGCCGAGCAGCAG 1063 Query 19699 GGGGGCATATTTCGTGCTGGCGGTACTGGCCGCGCCTAGCCGCATTTCGATCACCTGGCG 19758 || || ||||| || ||||| |||||||| || ||||||||||||| || ||| Sbjct 1062 CGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCGCG 1003 Query 19759 GGCCTCGTCGGGTAAGTCGGCGTCATCCAGCAGGTCACCGAGCGTTGATTTCTGCGCGTT 19818 |||||||| || | ||||| ||| |||||||||| ||||| |||||||||||||| Sbjct 1002 CGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCGTT 943 Query 19819 TGGGATGTGATGCGCGGGTGCCAGATCGCGCAGGAGGGGGAGAAAATCGGCACCGGTAAG 19878 ||||| | |||||| || ||||| |||||||| || || || ||| ||||| || Sbjct 942 CGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTCAG 883 Query 19879 GCCGCCGCCGTAAGTCGCTTGCGCGGCCTC---CTGCAGTTCAGCGCGCGCAGCG-GCCA 19934 ||||| |||||| || |||| | |||||| |||||| || || | ||| | || Sbjct 882 GCCGCTGCCGTAC-TC-CTTG-GTGGCCTCAGCCTGCAGCTCTT-GCTTGTGGCGCGTCA 827 Query 19935 CCGCGGCGGTCGCGGCTTTAGCTAAATCAGTGTCCACATAAAACCCGCGATCGTTAATGC 19994 | || || |||| || || || || || ||||||| | || ||||| ||||| || Sbjct 826 CGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGATCA 767 Query 19995 GCTGGTCAAGTGCCAAGATCTCGTTTTCTTTGTCTATCTCGCCCCATGACGGCATTTTGT 20054 ||||||||||| ||| ||| ||||| || || || | | |||||| | ||| || || Sbjct 766 GCTGGTCAAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGGT 707 Query 20055 AGTAGATCTCACGCATTGCCGTGATGTCGTTGCGCGCGTAGTGCTTGAATTGCTTCCATT 20114 | || | ||| ||||| | | ||||||| |||| ||||| | |||||| ||| | Sbjct 706 AATACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCACT 647 Query 20115 CGTCCGGATGCGT-GTTGCGGTCATAGCGTCGGATCTTGTAGTTTTTCGGTGTAGGCTTG 20173 |||| || ||||| | || || ||||| || | |||||| || || |||||||| Sbjct 646 CGTCGGGGTGCGTAGCGGCCGTG-TAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTA 588 Query 20174 CAGAATCGCTTGATCAGCGCCTTACCCGCTTTGTCTTTCGCCAGGTCGGC--ATCGACGT 20231 ||||| || |||||||||||||| ||||| ||||| || || | || || ||||||| Sbjct 587 CAGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTTGGC--GTTCTGCTCATCGACGC 530 Query 20232 TAAGCACTTCGCACAGTTTATCCAGGCTGCCGGGTAGCGCGTGGCGGAACGCCTGCACCA 20291 ||||| ||| ||| ||||||||| || || |||||||||||||||||| | || Sbjct 529 CTAGCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCA 470 Query 20292 TTGTATCGTGGATGTGCTCCGGCGGGATATCG-AGACCAAGGCATTCGCGGATGATCAAG 20350 | || || | ||| | |||||||||||||| || || | |||||| || || | || Sbjct 469 TGGTGTCTTCGATATTGGCCGGCGGGATATCGTAGCCCCA-GCATTCTCGCATCAGCAGC 411 Query 20351 CGGTCGAACATCAAGCCGTTATGCATCACCAGT 20383 |||||||||| || |||||| ||||| |||||| Sbjct 410 CGGTCGAACAGCAGGCCGTTCTGCATTACCAGT 378 Score = 288 bits (318), Expect = 3e-73 Identities = 853/1291 (66%), Gaps = 102/1291 (8%) Strand=Plus/Minus Query 18306 CAGGTCAGGGCAGCCGCGCCGCCCCTCATAGGATATCTTGCGCACCAAGCCGCCGATCGC 18365 ||| || ||||| || |||||||| || || || | |||| | |||||| | Sbjct 2582 CAGATCGGGGCACCCATTGCGCCCCTCGTATCGGATTTTTCTTACCAGGGCGCCGAGCTT 2523 Query 18366 CTTAAAC-CGTCGTTGCAGGTGCGCCTGCACTTTACCTTCGGGCGTCATACAACCCCCAT 18424 || |||| || | ||| | | || || ||||| ||||| || ||||| || Sbjct 2522 CTCAAACTCGGCTTTGGCGTAG-GCTTGGACTTTCCCTTCAGGGGTCATG--------AT 2472 Query 18425 CATTTCTTGTAGCGGTA--TCCTTCCCAGCCCTCGGCCTTTAGCGGGAATCCCTTGGCCC 18482 ||||| |||||||||| | | || |||||||| |||||||| || |||| Sbjct 2471 TATTTCCTGTAGCGGTACATAATATCC--CCCTCGGCGGCCAGCGGGAAACCGCGCGCCC 2414 Query 18483 AGGCTGGCAAGTCGCACATCAGGCGCT-CAAGTTCGGCAACGTTGTATTCTGCCGTA-TC 18540 ||| || | || ||||| | || | | ||||| || |||||||| | | ||| || Sbjct 2413 AGGACGGGAGGTGACACATT-GCCGATTCGAGTTCCGCCACGTTGTAA-CGGTCGTCGTC 2356 Query 18541 GGGCGTCTCGGTGATCAGCTCATCGTGTACCGACAGGATGATCTCATAGCCTGCG---TT 18597 ||||| ||||| ||||| || || || || |||||||||| |||||| ||| | Sbjct 2355 CGGCGTTTCGGTAATCAGTTCGTCATGAACACTCAGGATGATCGGATAGCCGGCGGCCTC 2296 Query 18598 ATCGACGGGCAGCATGCACCATGCTAGGATGTCGCGGCACAGCGCCTGGGTGACGTTCTC 18657 | ||||||||| | |||| || || | |||||||||||||||||| || ||| || Sbjct 2295 AACGACGGGCATCG---ACCAGGCCAGCAAGTCGCGGCACAGCGCCTGCACGATGTTTTC 2239 Query 18658 CGCCAATTTCCCGCCGTAGGTGTGCTGCCACCCCCATTGACGCGTTAACTGGTTCTCTCC 18717 ||||| || |||||||||||| |||||| ||||| || || || ||||||||| || Sbjct 2238 CGCCAGCTTGCCGCCGTAGGTGAACTGCCAGCCCCACTGCCGTGTGGTCTGGTTCTCGCC 2179 Query 18718 ACGGTATTTGATGCGTGGGCGCGCT---TTCTCGCCCG----GATCG----TCC-TCGT- 18764 ||||||||||||| | || | |||| | ||| ||||| ||| ||| Sbjct 2178 CTGGTATTTGATGCGAGTCCGTTTTTGCTTCTTGGCCGCAGTGATCGAAAATCCGCCGTC 2119 Query 18765 -TGGTTT-------TCTCC---------------------ATCGACACGCCGATCCCCGG 18795 |||| | ||||| ||||||| ||||||||| || Sbjct 2118 GTGGTGTCTGACCGTCTCCGGTTCCAGCTCAACGATTTCAATCGACAGGCCGATCCCTGG 2059 Query 18796 ATAGGACAGGATACGTCCGGACGGCAATTCGATCTTTAGCCAGTTGCCCGG---CTTGCC 18852 ||| || | || || |||||| || | |||||||| ||||| |||| | Sbjct 2058 ATAACTAAGCACGCGACCACTCGGCAACTCAACTTTTAGCCACCACCCCGGCACCTTGTC 1999 Query 18853 --------AGAC-CGCGTTAATGTCCGCTCGATGCGTATGGCGCGTTTGCCGTCTTGGCG 18903 | | || || ||||| || ||| | || || | |||| || || Sbjct 1998 GCCGTTTTCGTCGCGGGTGAATGTGCGGGTGATCTTGACCGCACGATCTCCGTTTTCTCG 1939 Query 18904 AACCTTGGCCCCCGCCCAATACGACGC-CCCTGGATTGTCGATAGCCATCAAACAGGCTT 18962 || ||| || |||||| ||| ||| || ||||| | ||| ||| | || | Sbjct 1938 CACGCGGGCGCCAGCCCAAAACG-CGCGTCCCGGATTCTTGATCGCCGCCTGCGCCGCGT 1880 Query 18963 CTTCCAGGTCATACCAGAATTGCACCGTTCTTGGGTGCGACTCCCGCCACATACGTTTGA 19022 |||| || || | ||||||| ||| || ||||||||||| |||||||| || |||| Sbjct 1879 CTTCAAGATCCTGCCAGAATGCCACTGTCTCCGGGTGCGACTCGCGCCACATGCGCTTGA 1820 Query 19023 TGCAATCGCATGTAAGCCACGCTTTTTTAGAGAGGACG-ACGGTCGTTCGATCGTCTTTT 19081 | ||||| || | |||| | || | ||| || ||| | | ||| ||| |||| Sbjct 1819 TAGCGTCGCAGGTCATCCACACCTTGCGCGGCAGGTCGTACGAT-GGTCGGTCGGCTTTC 1761 Query 19082 TTACCGGGTAGCG---GCTTGCGCTTCACCTCCTGCAACTTCATGAATTCATAGGCGCGT 19138 || || | ||| |||| ||| |||||| | |||||| || |||| Sbjct 1760 TTGCCCTTTGGCGCGCGCTT---ATTCTTCTCCTGAATGCGGGCGAATTCGAAGCCGCGG 1704 Query 19139 AGCGCGGCGCGCCAGTGGTAATCAGGGAAAGTGCCAGCCATCGTAACG-GCCATTTCCTC 19197 |||||||| ||| || ||| ||||| |||||| |||| || | ||||| | | Sbjct 1703 CGCGCGGCGGCCCAAATGTGATCCGGGAATGTGCCATCCAT-GTCTTGCGCCATCTGGTA 1645 Query 19198 CAGATCCAGACCGAGGTTTTTAGAGAATGTCAGGAACGCGGCCACGCCGCCACCGTAGCC 19257 ||| || || ||||||||||| | ||| ||||||||| ||||| ||||| ||||| || Sbjct 1644 CAGGTCGAGGCCGAGGTTTTTGGCGAACTGCAGGAACGCCGCCACCCCGCCGCCGTACCC 1585 Query 19258 GAGACCCAATTCGCAGGCCTTGCCGATCTGCCGGCGG---TAGCCATCCACGTCG----- 19309 || || | |||||||||||||||||||||||| || | || || | | | | Sbjct 1584 CAGGCCGAGTTCGCAGGCCTTGCCGATCTGCCGTAGGTCTTTGCGATTCTCCTTGATAAA 1525 Query 19310 TCCGGACT-GATGCCGAACATCTTGCCGGCGGTCACTTTGTAGATATC-CAACCCCGCGC 19367 |||| | || || ||||||||||||||| || | |||||| || | | Sbjct 1524 GCCGGGGTCGAGGCGGAACATCTTGCCGGCCGTTTCGCAGTAGATGTCGCGTTTTTTGTC 1465 Query 19368 GGA-AAG-TATCGAGCGCCGAATCCTCCCCCGCCAGCCAGGCCAGACCGCGACCCTCGAC 19425 ||| ||| || || || | || || |||| | ||||||||| ||||| || || || Sbjct 1464 GGAGAAGACGTCCAGAGCTGTATGTTCGCCCGAAATCCAGGCCAGCCCGCGCCCTTCCAC 1405 Query 19426 GTTAGAGTAGTCGGCAACGACCAATTTTTTACCCGGTGCCGGGATGATGCAGCCGCGAAC 19485 ||| || ||||||||||| || ||||| ||||| | | |||| ||||| || || Sbjct 1404 GTTTGAATAGTCGGCAACAACGAATTTATTACCTTTTTCAGGGACAATGCATGATCGCAC 1345 Query 19486 CGTGGATGCCGCCAGCTTCATTACGTCGAAA 19516 |||| ||| |||||||| |||||||||| Sbjct 1344 GGTGGTTGCGGCCAGCTTGGCTACGTCGAAA 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137530248938476