Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_023608.1 Length=42093 Score E Sequences producing significant alignments: (Bits) Value seq31 605 8e-169 >seq31 Length=5916 Score = 605 bits (670), Expect = 8e-169 Identities = 868/1211 (72%), Gaps = 19/1211 (2%) Strand=Plus/Minus Query 25432 CGCGCGGCAACGACCTCATCCAGCGTGTCTTTAGCGACTATGTGATACAGGAACACTGGA 25491 || ||||| | || || ||||||||| | || || || | || | |||||| || Sbjct 4563 CGGGCGGCCAGCACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGG 4504 Query 25492 CGCTCGTGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAG 25551 ||| ||| || ||||| ||||||| || ||||| |||||||| || | |||| ||| Sbjct 4503 CGCGGGTGACCGGCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAG 4444 Query 25552 TGCTCCAGGTTCCA-GCCTTGCGAAATAAACGCCAGATGATGCCCGCCGTCCTGTAAATT 25610 ||||| | |||||| | | || || ||| ||||| || |||||||| ||||| | || Sbjct 4443 TGCTCAAAGTTCCATGTGTCGCTGAA-AAATGCCAGGTGGTGCCCGCCATCCTGCATGTT 4385 Query 25611 CAAACCATGGCCCGCCGATGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCA 25670 | || |||||||| || || ||||| |||||||| || ||||| | || |||||| Sbjct 4384 GAGGCCGTGGCCCGCGGACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCA 4325 Query 25671 AGATTCCATCTGCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCG 25730 || | ||| ||||| ||| || || ||| |||||||||| ||||| || Sbjct 4324 GCGCTCAACCTGGCGGTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCG 4265 Query 25731 CCTAAGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCACCCTG 25790 | | |||||| | || ||||||||| ||||||||||||||| |||||| || || Sbjct 4264 TTTCAAGATGCGCGCCAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGA 4205 Query 25791 CAACTCCTCGACAATGGACTCTAACGCATCGAGTTTCGCGTCGTGCACTTTCTCCCAGTC 25850 |||||| |||| ||| ||||| | || || || |||||||||||||| ||| |||| || Sbjct 4204 CAACTCGTCGATAATCGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC 4145 Query 25851 TTTCGTTGCTTCACCATCCGGCCCCGACACATACACGGCACCGGAAGCAATCTGCAAGCA 25910 | | || || || || | ||||||||| || ||| || ||||||| ||| Sbjct 4144 GGTAGACCGCTCGCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAGGCA 4085 Query 25911 CTTAGCCGTTTTAGCGGCGGCGTTAGCCGCTTCAACTTCTCCGCTCTCCAGTTCCGCGAA 25970 || || || || || ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 4084 TTTGGCGGTACGGGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGCGAA 4025 Query 25971 TAACTTCTCCTCCATATCGATGTAGGCTTGACGCGCTTTCTTCGGCAGGTCAATCTCAAC 26030 || || |||||||| || |||| || | ||||| || |||| || | | || Sbjct 4024 TAGCTGTTCCTCCATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGACGAC 3965 Query 26031 CGGTACAATAACCGGTGCTTCACAACCGAACCACTCGGCGGCATCAATGGTAAGGCTGAT 26090 ||| || | || || ||||| || || ||||||| || || | ||| || |||| Sbjct 3964 CGGGACGACGACAGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACTGAC 3905 Query 26091 ATCCTTCATCTTCTGGTGAATCTCGTTATCCGCGCCTGGGCGAGCATGGTACTCCCGCGC 26150 || |||| |||||||| |||||| | || || || |||| | ||| || || || Sbjct 3904 GTCTTTCAGTTTCTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGTATTCGCGGGC 3845 Query 26151 CATCGCA--GATTTGCCTTTCTGTACCGAGTTAAACCATCTATCGGTAAAGGCCGTGTAT 26208 || | ||| | |||||||| |||||| | ||||| | |||||| || || ||||| Sbjct 3844 GG-CGTAATGATCT-CCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTGTAA 3787 Query 26209 GAAGACCCAAGGCGTTCACCCGCGTCGATGAACCAGTTCTGACCCCACAAGTCTTTGAGG 26268 || || || || || || || |||| |||||||||||||||||||| ||||||||| Sbjct 3786 GAGCTGCCGAGACGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTGAGG 3727 Query 26269 CCGTTTGGTGATGGTGTACCGGTCAGGTTAATGAAACGCTTAACTTTACCGAACGCCACC 26328 ||||| |||||||| ||||||||||| || || || ||||| || ||||||||||| || Sbjct 3726 CCGTTCGGTGATGGCGTACCGGTCAGATTGATAAAGCGCTTCACCTTACCGAACGCTACT 3667 Query 26329 TTACTAAGCGCCTTTGCCCGCTTGCTACCGCCTGAACGGCTGCGGAAAGATTTCAGTTTC 26388 ||||| || | ||| || |||||||||||||| || ||||||||| ||||| || ||| Sbjct 3666 TTACTGAGTGTCTTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTAAGCTTC 3607 Query 26389 GTGCTCTCATCGGCCACGATAACAGTAAAAGGCCAGTCGTCTTTGCCGTAGTAATCAATC 26448 || ||| ||||| || || || || || ||||| |||| |||||| || | | | Sbjct 3606 GTCGACTCGTCGGCAACAATGACGGTGAATGGCCACGCGTC---GCCGTAATAGCCGACC 3550 Query 26449 AGCCACTCGATAACTTCGTAATTTGTGCAAACCACGTT---AGCGTCTGACTCCAGCGCC 26505 | ||| ||||| || || || || ||| |||||||| | |||| | ||||||| Sbjct 3549 AACCAGTCGATCACCTCATAGTTAACGCACACCACGTTGAAATCGTC---GTTCAGCGCC 3493 Query 26506 GCGATGC-GTC-GCTTCTCAGAACCAGTTGCATCTACTACACTCAGACACGGGAAGTTCC 26563 || | || ||| || ||| | || || | || || || | ||| || ||||| | || Sbjct 3492 GCCAGGCGGTCGGCCTCTTTG--CCGGTGCCGTCCACGACGCGCAGGCATGGGAAATCCC 3435 Query 26564 ATTTCTCTTGTTCTGCGGGCCACGTACCTGACGCAACGCGCAACGGGGCGAGGATTAACA 26623 | ||| | ||||| || ||||| || ||||| |||||||||| ||| || ||||| | || Sbjct 3434 ACTTCACCTGTTCGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAAGCA 3375 Query 26624 CTCGGTCGTCG 26634 | || ||| || Sbjct 3374 CCCGATCGCCG 3364 Score = 408 bits (452), Expect = 1e-109 Identities = 703/1017 (69%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 30495 TAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAATGTTCGC 30554 || ||||||||||||||||| |||||||| || ||||| || ||||| |||| || || Sbjct 1184 TAGTACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGT 1125 Query 30555 TTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCTAACAGC 30614 || || |||||||| |||||||| || |||||||| | || || |||| | |||| Sbjct 1124 TTAGCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTCGCGCGACAGGCCGAGCAGC 1065 Query 30615 AACGGCGCGTATTTCGTCGATGCGGTAGAAGCAGCCCCGAGACGCATCTCGATAATAGTG 30674 | ||| |||||||| ||||||||||| || || || || || ||||| ||||| | | Sbjct 1064 AGCGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCG 1005 Query 30675 CGGGCGTCGTCCGGTAAATCCTCATCCGCCAGCAAATCGTTTAGTGTTGACTTCTGTGCG 30734 || || |||||||| | || || ||||||| |||||||| || || ||||| ||| Sbjct 1004 CGCGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCG 945 Query 30735 TTGTGAATGCGGTGCGCCGGCGCCAGTTCCTGTAAAATAGGCAAGAAGTCTTTGCCGGTT 30794 || | || |||||||||||||| || | | | |||| |||| ||||| Sbjct 944 TTCGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTC 885 Query 30795 AGTGAACCGCCGTATTTGCGTTG--GGCTTCTTCCTGTAGCTCTTCCTTGTGGCGCGTCA 30852 || | |||||| | | ||| ||| || |||| ||||||| |||||||||||||| Sbjct 884 AGGCCGCTGCCGTACT--CCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCGTCA 827 Query 30853 CTGCTTCAATTGCGGCCTCAGCGAGGGCAACGTCAACCTTAAATCCGCGGTCGTTAATTA 30912 | || || || || |||| || | | | ||||| || || ||||||||||| || | Sbjct 826 CGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGATCA 767 Query 30913 CTTGGTCTAACCACAGCACGCGGTCTTCGAACTCAGAATTCCCCCACTTCGGCATTTTCT 30972 ||||| | ||| | || || ||| | || ||||| |||| || | Sbjct 766 GCTGGTCAAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGGT 707 Query 30973 TATACACTTCACGCATAGACGTAATGTCGCTTTTTGCGTATGCGATAAATTCTGCCCACT 31032 |||||| || ||||| ||| |||||||| ||||| ||| |||| ||||||| Sbjct 706 AATACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCACT 647 Query 31033 CTTTTGGGTGGGTATCGGCGGTATATCGTCGAATCTTATAGTTCTTAGGCGTAGGCTTAC 31092 | | ||||| ||| |||| || || || || | ||| || ||||||||||||||||| Sbjct 646 CGTCGGGGTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTAC 587 Query 31093 TGAACCGCTGTATGAGCGCCTTACCGCGTTTATCCTTAGC--CATGCTTGCGTCAATGTT 31150 ||| || | || |||||||| || || ||||| || |||| | || | | Sbjct 586 AGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTTGGCGTTCTGCT--CATCGACGCC 529 Query 31151 TAAAACCTCACACAGCGTGGCCAGTGAACCCGGGAGGGCGTGTCGGAACGCTACTATCAT 31210 || || || || | |||| |||||| || ||||| |||||||| | ||||| Sbjct 528 TAGCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCAT 469 Query 31211 AGTGTCTATAATGTTTTCTACCAGGAGTTCGAACCCCCAGCAATGCTTAATAACTGGTCG 31270 |||||| || || | | ||| ||| | |||||||| | || | | || Sbjct 468 GGTGTCTTCGATATTGGCCGGCGGGATATCGTAGCCCCAGCATTCTCGCATCAGCAGCCG 409 Query 31271 GTCGAACATAAGGAAGTTTTGGCCTACCAGTTTGAGATTGCTGTCTGGTTTTTGCAGCTT 31330 |||||||| ||| ||| || ||||||| | | | | || || | ||| | Sbjct 408 GTCGAACAGCAGGCCGTTCTGCATTACCAGTCGGCTTTCGGTATCGGGCCTCGCCAGTTC 349 Query 31331 TAGCATCGCCCGACGCAAATCACGCGGCATATCGCTGCCGTCGGTGGCGTCCCATACTTG 31390 ||| ||| || || || |||||||| |||||||||||||||||||||||| || Sbjct 348 GCGCAGCGCACGTTTCAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCCATACCTG 289 Query 31391 CACAGGGCCTTCATCGAAAGCGTAGGTGCAGATAACAATTTCGGTAGTCGGATGTTCGGC 31450 ||| | || ||||| |||||| ||||||| | |||||||||| | ||||| || Sbjct 288 CACCTTTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGTGTTCCGC 229 Query 31451 GTAAGCATAGGAACCGACtttttttAAATCGGCTTCTGAAAATGTTTCAGTATCGAG 31507 || ||||||| ||| |||||| || |||||||| ||| | || || |||||||| Sbjct 228 ATACGCATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGAATACGTCTCGGTATCGAG 172 Score = 100 bits (110), Expect = 8e-17 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 28496 ACACATTAGCTTTTCCAGTTCTGCTACCGTGTAATCTGATGTA-TCCGGAGTCTCGCATA 28554 ||||||| | ||| ||||| || || ||||| | | || ||||| || ||| | Sbjct 2400 ACACATTGCCGATTCGAGTTCCGCCACGTTGTAA-CGGTCGTCGTCCGGCGTTTCGGTAA 2342 Query 28555 CCAGTTCATCGTGAACAGAAAGAACTATTGGATACCCACCGGCTTCTACATTAAGCATCG 28614 |||||| || |||||| || | || ||||| || |||| || || |||||| Sbjct 2341 TCAGTTCGTCATGAACACTCAGGATGATCGGATAGCCGGCGGCCTCAACGACGGGCATCG 2282 Query 28615 CATAGGCCAATAAGTCACGGCACAACGCCTGAACGATGTTCTCA-CAAGCCTTTCCGCCG 28673 |||||| ||||| ||||||| |||||| |||||||| || | ||| || |||||| Sbjct 2281 ACCAGGCCAGCAAGTCGCGGCACAGCGCCTGCACGATGTTTTCCGCCAGC-TTGCCGCCG 2223 Query 28674 TGTGTGTACAGGGTAGTCCACTGCCGTGTTAACTGGTTCTCGCCCTGGTACTTAAT 28729 | ||| || | |||||||||||| |||||||||||||||||| || || Sbjct 2222 TAGGTGAACTGCCAGCCCCACTGCCGTGTGGTCTGGTTCTCGCCCTGGTATTTGAT 2167 Score = 96.9 bits (106), Expect = 9e-16 Identities = 192/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 28055 TATAATAGTGTTCTATTAATTTATCAACCTGTTTCTTCGACCCAACAACAAAAACACTCG 28114 ||||||||| | | |||| | |||||||| || || || ||| ||| | | Sbjct 2754 TATAATAGTTTGCGATTAGGCTGTCAACCTGCGATTTGCTGCCGACGGTAAACACATTGG 2695 Query 28115 CACCGCGCTTTCTAAGCCGCTCGTGCTCCCGTAACTGGTGCGGGTCCGGCTTCGTGTTTT 28174 | ||||||||| | || |||||||| ||| |||||||||||| | ||| | Sbjct 2694 CGCCGCGCTTTTGCATGCGTTCGTGCTCGCGTGCCTGGTGCGGGTCTGTGCCGGTGGCCT 2635 Query 28175 CGTCTTTCTTCACCTCGACGAACCAGACGATGCCGCCAGGGAGAACTATCAACAGGTCAG 28234 ||||||||||||||||||||||||| |||| ||| | || |||| | || ||| || | Sbjct 2634 CGTCTTTCTTCACCTCGACGAACCACACGACGCCTCTCGGCAGAAGCACCAGCAGATC-G 2576 Query 28235 GAGCA-CCGGAGCGCCCCTCATAGGAAAGTTTCCGAACGAGGCCACCAAGGGCCTCAAA- 28292 | ||| || ||||||||| || | ||| | || ||| | || || |||||| Sbjct 2575 GGGCACCCATTGCGCCCCTCGTATCGGATTTTTCTTACCAGGGCGCCGAGCTTCTCAAAC 2516 Query 28293 TCGCTCCTTTGCGTATTTTTGCACGCGCCCTTCAGGCGT 28331 ||| | || ||||| ||| || ||||||||| || Sbjct 2515 TCG-GCTTTGGCGTAGGCTTGGACTTTCCCTTCAGGGGT 2478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134573503783420