Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_023696.1 Length=157568 Score E Sequences producing significant alignments: (Bits) Value seq988 93.3 4e-14 >seq988 Length=203328 Score = 93.3 bits (102), Expect = 4e-14 Identities = 199/292 (68%), Gaps = 9/292 (3%) Strand=Plus/Minus Query 133162 TTCGGCGGGACCGACTGCGCGCTGCCGCTGGTCTGGGCCAAGGAGACCAAG--GCCGAGT 133219 |||||| | ||||||||||||| |||| || ||||||||| | ||| ||| |||| | Sbjct 199313 TTCGGCAGTACCGACTGCGCGCAGCCGATGCTCTGGGCCACGCAGAAGAAGAAGCCG--T 199256 Query 133220 TCGACACGTTCCAGATCTACACCGACAACGAGACCTGGGCGGGCAACATCCACGTCGACC 133279 ||||| ||||| ||| |||||||||||| |||||| || | | ||| | Sbjct 199255 TCGACGCGTTCATCGTCTTCACCGACAACGACACCTGGCACGGAGAAGTGCACCCGTTCG 199196 Query 133280 AGGCGCTGGAACAGTACCGCCAGTCTTCGGGTGTCGATGCTCGGGTCGAGATCGTGT--- 133336 ||||| | | |||||||| |||| ||| |||| | | | | ||||||| Sbjct 199195 AGGCGATTAAGGAGTACCGCGAGTCCATGGGCATCGAGGATGCGCGCCTTATCGTGTGCG 199136 Query 133337 CCATGACGGCCACCGGCACCAGTCTGTGCAACCCGGATGATCCGGGCATGCTGGACGT-G 133395 |||||| |||||| | || | | |||| || || |||||||||||||| | Sbjct 199135 GCATGACCTCCACCGACTTCACCATCGCCGACCCCACGGACCCCGGCATGCTGGACGTCG 199076 Query 133396 TCGGGCTTCGACTCGACCGTTCCGCAGCTTCTCACCGATCACTCGGCGGGTC 133447 || ||||||||| | | || || | || ||| |||| || | |||||| Sbjct 199075 TC-GGCTTCGACACCGCTGTGCCCAACATTATCAGCGATTTCTTGACGGGTC 199025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504079757650560