Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_024204.1 Length=42764 Score E Sequences producing significant alignments: (Bits) Value seq31 596 4e-166 >seq31 Length=5916 Score = 596 bits (660), Expect = 4e-166 Identities = 866/1211 (72%), Gaps = 19/1211 (2%) Strand=Plus/Minus Query 25385 CGCGCGGCAACGACCTCATCCAGCGTGTCTTTAGCGACTATGTGATACAGGAACACTGGA 25444 || ||||| | || || ||||||||| | || || || | || | |||||| || Sbjct 4563 CGGGCGGCCAGCACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGG 4504 Query 25445 CGCTCGTGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAG 25504 ||| ||| || ||||| ||||||| || ||||| |||||||| || | |||| ||| Sbjct 4503 CGCGGGTGACCGGCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAG 4444 Query 25505 TGCTCCAGGTTCCA-GCCTTGCGAAATAAACGCCAGATGATGGCCGCCGTCCTGTAAATT 25563 ||||| | |||||| | | || || ||| ||||| || || ||||| ||||| | || Sbjct 4443 TGCTCAAAGTTCCATGTGTCGCTGAA-AAATGCCAGGTGGTGCCCGCCATCCTGCATGTT 4385 Query 25564 CAAGCCATGCCCGGCTGACGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCA 25623 | ||| || || || ||||| ||||| |||||||| || ||||| | || |||||| Sbjct 4384 GAGGCCGTGGCCCGCGGACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCA 4325 Query 25624 AGATTCCATCTGCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCG 25683 || | ||| ||||| ||| || || ||| |||||||||| ||||| || Sbjct 4324 GCGCTCAACCTGGCGGTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCG 4265 Query 25684 CCTAAGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCCCCCTG 25743 | | |||||| | || ||||||||| ||||||||||||||| |||||| || || Sbjct 4264 TTTCAAGATGCGCGCCAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGA 4205 Query 25744 CAACTCCTCGACAATGGACTCTAATGCATCTAGTTTCGCGTCGTGCACTTTCTCCCAGTC 25803 |||||| |||| ||| ||||| | || || || |||||||||||||| ||| |||| || Sbjct 4204 CAACTCGTCGATAATCGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC 4145 Query 25804 TTTCGTTGCTTCACCATCCGGCCCTGACACATACACGGCGCCTGATGCAATCTGCAAACA 25863 | | || || || || | ||||||||| || || || ||||||| || Sbjct 4144 GGTAGACCGCTCGCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAGGCA 4085 Query 25864 CTTCGACGTCTTCGCCGCAGCGTTAGCCGCTTCAACTTCTCCGCTCTCCAGTTCCGCGAA 25923 || | || ||||| ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 4084 TTTGGCGGTACGGGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGCGAA 4025 Query 25924 TAACTTCTCCTCCATATCGATGTAAGCCTGGCGTGCTTTCTTAGGCAGGTCAATTTCAAC 25983 || || |||||||| || |||| |||| ||| || || |||| || | | || Sbjct 4024 TAGCTGTTCCTCCATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGACGAC 3965 Query 25984 CGGCACGATAACAGGCTCTTCACAACCGAACCACTCAGCAGCATCAATGGTCAGGCTGAT 26043 ||| |||| ||||||| ||||| || || |||| || || || | |||||| |||| Sbjct 3964 CGGGACGACGACAGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACTGAC 3905 Query 26044 ATCCTTCATCTTCTGATGAATCTCTTTATCCGCGCCTGGGCGGGCGTGGTACTCCCGCGC 26103 || |||| ||||| || ||||| | || || || |||||| ||| || || || Sbjct 3904 GTCTTTCAGTTTCTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGTATTCGCGGGC 3845 Query 26104 CATCGCA--GATTTGCCTTTCTGTACCGAGCTAAACCATCTATCGGTAAAGGCCGTGTAT 26161 || | ||| | |||||||| |||||| | ||||| | |||||| || || ||||| Sbjct 3844 GG-CGTAATGATCT-CCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTGTAA 3787 Query 26162 GAAGAACCGAGGCGCTCACCAGCGTCTATAAACCAGTTCTGACCCCACAAGTCCTTTAGA 26221 || ||||| ||||| || || || | ||||||||||||||||||| || || || Sbjct 3786 GAGCTGCCGAGACGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTGAGG 3727 Query 26222 CCGTTCGGCGACGGCGTACCGGTCAGGTTAATGAAACGCTTAACTTTACCGAACGCCACC 26281 |||||||| || |||||||||||||| || || || ||||| || ||||||||||| || Sbjct 3726 CCGTTCGGTGATGGCGTACCGGTCAGATTGATAAAGCGCTTCACCTTACCGAACGCTACT 3667 Query 26282 TTACTAAGCGCCCTCGCCCTCTTGCTCCCGCCAGAACGGCTACGGAACGATTTCAGCTTC 26341 ||||| || | | |||| | |||||| ||||| || ||| ||||||||||| |||||| Sbjct 3666 TTACTGAGTGTCTTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTAAGCTTC 3607 Query 26342 GTGCTCTCATCGGCAACGATAACGGTAAAAGGCCAGTCGTCTTTGCCGTAGTAGTCAATA 26401 || ||| |||||||| || ||||| || ||||| |||| |||||| ||| | | Sbjct 3606 GTCGACTCGTCGGCAACAATGACGGTGAATGGCCACGCGTC---GCCGTAATAGCCGACC 3550 Query 26402 AGCCATTCTATGACTTCGTAATTTGTGCAAACCACGTT---AGCGTCTGACTCCAGCGCC 26458 | ||| || || || || || || ||| |||||||| | |||| | ||||||| Sbjct 3549 AACCAGTCGATCACCTCATAGTTAACGCACACCACGTTGAAATCGTC---GTTCAGCGCC 3493 Query 26459 GCGATGC-GTC-GCTTCTCAGAACCAGTTGCATCTACTACACTCAGACACGGGAAGTTCC 26516 || | || ||| || ||| | || || | || || || | ||| || ||||| | || Sbjct 3492 GCCAGGCGGTCGGCCTCTTTG--CCGGTGCCGTCCACGACGCGCAGGCATGGGAAATCCC 3435 Query 26517 ATTTCTCTTGTTCTGCGGGCCACGTACCTGACGCAACGCGCAACGGGGCGAGGATTAACA 26576 | ||| | ||||| || ||||| || ||||| |||||||||| ||| || ||||| | || Sbjct 3434 ACTTCACCTGTTCGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAAGCA 3375 Query 26577 CTCGGTCGTCG 26587 | || ||| || Sbjct 3374 CCCGATCGCCG 3364 Score = 390 bits (432), Expect = 3e-104 Identities = 699/1017 (69%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 30448 TAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAATGTTCGC 30507 || ||||||||||||||||| |||||||| || ||||| || ||||| |||| || || Sbjct 1184 TAGTACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGT 1125 Query 30508 TTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCTAACAGC 30567 || || |||||||| |||||||| || |||||||| | || || |||| | |||| Sbjct 1124 TTAGCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTCGCGCGACAGGCCGAGCAGC 1065 Query 30568 AACGGCGCGTATTTCGTCGATGCGGTAGAAGCAGCCCCGAGACGCATCTCGATAATAGTG 30627 | ||| |||||||| ||||||||||| || || || || || ||||| ||||| | | Sbjct 1064 AGCGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCG 1005 Query 30628 CGGGCGTCGTCCGGTAAATCCTCATCCGCCAGCAAATCGTTTAGTGTTGACTTCTGTGCG 30687 || || |||||||| | || || ||||||| |||||||| || || ||||| ||| Sbjct 1004 CGCGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCG 945 Query 30688 TTGTGAATGCGGTGCGCCGGCGCCAGTTCCTGTAAAATAGGCAAGAAGTCTTTGCCGGTT 30747 || | || |||||||||||||| || | | | |||| |||| ||||| Sbjct 944 TTCGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTC 885 Query 30748 AGTGAACCGCCGTATTTGCGTTG--GGCTTCTTCCTGTAGCTCTTCCTTGTGGCGCGTCA 30805 || | |||||| | | ||| ||| || |||| ||||||| |||||||||||||| Sbjct 884 AGGCCGCTGCCGTACT--CCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCGTCA 827 Query 30806 CTGCTTCAATTGCGGCCTCAGCGAGGGCAACGTCAACCTTAAATCCGCGGTCGTTAATTA 30865 | || || || || |||| || | | | ||||| || || ||||||||||| || | Sbjct 826 CGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGATCA 767 Query 30866 CTTGGTCTAACCACAGCACGCGGTCTTCGAACTCAGAATTCCCCCACTTCGGCATTTTCT 30925 ||||| | ||| | || || ||| | || ||||| |||| || | Sbjct 766 GCTGGTCAAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGGT 707 Query 30926 TATACACTTCACGCATAGACGTAATGTCGCTTTTTGCGTATGCGATAAATTCTGCCCACT 30985 |||||| || ||||| ||| |||||||| ||||| ||| |||| ||||||| Sbjct 706 AATACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCACT 647 Query 30986 CTTTTGGGTGGGTATCGGCGGTATATCGTCGAATCTTATAGTTCTTAGGCGTAGGCTTAC 31045 | | ||||| ||| |||| || || || || | ||| || ||||||||||||||||| Sbjct 646 CGTCGGGGTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTAC 587 Query 31046 TGAACCGCTGTATGAGCGCCTTACCGCGTTTATCCTTAGC--CATGCTTGCGTCAATGTT 31103 ||| || | || |||||||| || || ||||| || |||| | || | | Sbjct 586 AGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTTGGCGTTCTGCT--CATCGACGCC 529 Query 31104 TAAAACCTCACACAGCGTGGCCAGTGAACCCGGGAGGGCATGTCGGAACGCTACTATCAT 31163 || || || || | |||| |||||| || || || |||||||| | ||||| Sbjct 528 TAGCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCAT 469 Query 31164 AGTGTCTATAATGTTTTCTACCAGGAGTTCGAACCCCCAGCAATGCTTAATAACTGGTCG 31223 |||||| || || | | ||| ||| | |||||||| | || | | || Sbjct 468 GGTGTCTTCGATATTGGCCGGCGGGATATCGTAGCCCCAGCATTCTCGCATCAGCAGCCG 409 Query 31224 GTCGAACATAAGGAAGTTTTGGCCTACCAGTTTGAGATTGCTGTCTGGTTTTTGCAGCTT 31283 |||||||| ||| ||| || ||||||| | | | | || || | ||| | Sbjct 408 GTCGAACAGCAGGCCGTTCTGCATTACCAGTCGGCTTTCGGTATCGGGCCTCGCCAGTTC 349 Query 31284 CAGCATCGCCCGACGCAAATCACGCGGCATATCGCTGCCGTCGGTGGCGTCCCATACTTG 31343 ||| ||| || || || |||||||| |||||||||||||||||||||||| || Sbjct 348 GCGCAGCGCACGTTTCAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCCATACCTG 289 Query 31344 CACAGGGCCTTCATCGAAAGCATAAGTGCAGATAACAATTTCAGTAGTCGGATGTTCGGC 31403 ||| | || ||||| || || ||||||| | ||||| |||| | ||||| || Sbjct 288 CACCTTTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGTGTTCCGC 229 Query 31404 GTAGGCATAGGAACCGACTTTTTTCAAATCGGCTTCTGAGAATGTTTCAGTATCGAG 31460 || ||||||| ||| ||||||||| |||||||| || | || || |||||||| Sbjct 228 ATACGCATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGAATACGTCTCGGTATCGAG 172 Score = 102 bits (112), Expect = 2e-17 Identities = 193/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 28008 TATAATAGTGTTCTATTAATTTATCAACCTGTTTCTTCGACCCAACAACAAAAACATTCG 28067 ||||||||| | | |||| | |||||||| || || || ||| ||||| | Sbjct 2754 TATAATAGTTTGCGATTAGGCTGTCAACCTGCGATTTGCTGCCGACGGTAAACACATTGG 2695 Query 28068 CACCGCGCTTTCTAAGCCGCTCGTGCTCCCGTAACTGGTGCGGGTCCGGCTTCGTGTTTT 28127 | ||||||||| | || |||||||| ||| |||||||||||| | ||| | Sbjct 2694 CGCCGCGCTTTTGCATGCGTTCGTGCTCGCGTGCCTGGTGCGGGTCTGTGCCGGTGGCCT 2635 Query 28128 CGTCTTTCTTCACCTCGACGAACCAGACGATGCCGCCAGGGAGAATTATCAACAGGTCAG 28187 ||||||||||||||||||||||||| |||| ||| | || |||| | || ||| || | Sbjct 2634 CGTCTTTCTTCACCTCGACGAACCACACGACGCCTCTCGGCAGAAGCACCAGCAGATC-G 2576 Query 28188 GAGCA-CCGGAGCGCCCCTCATAGGAAAGTTTCCGAACGAGGCCACCAAGGGCCTCAAA- 28245 | ||| || ||||||||| || | ||| | || ||| | || || |||||| Sbjct 2575 GGGCACCCATTGCGCCCCTCGTATCGGATTTTTCTTACCAGGGCGCCGAGCTTCTCAAAC 2516 Query 28246 TCGCTCCTTTGCGTATTTTTGCACGCGCCCTTCAGGCGT 28284 ||| | || ||||| ||| || ||||||||| || Sbjct 2515 TCG-GCTTTGGCGTAGGCTTGGACTTTCCCTTCAGGGGT 2478 Score = 100 bits (110), Expect = 8e-17 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 28449 ACACATTAGCTTTTCCAGTTCTGCTACCGTGTAATCTGATGTA-TCCGGAGTCTCGCATA 28507 ||||||| | ||| ||||| || || ||||| | | || ||||| || ||| | Sbjct 2400 ACACATTGCCGATTCGAGTTCCGCCACGTTGTAA-CGGTCGTCGTCCGGCGTTTCGGTAA 2342 Query 28508 CCAGTTCATCGTGAACAGAAAGAACTATTGGATACCCACCGGCTTCTACATTAAGCATCG 28567 |||||| || |||||| || | || ||||| || |||| || || |||||| Sbjct 2341 TCAGTTCGTCATGAACACTCAGGATGATCGGATAGCCGGCGGCCTCAACGACGGGCATCG 2282 Query 28568 CATAGGCCAATAAGTCACGGCACAACGCCTGAACGATGTTCTCA-CAAGCCTTTCCGCCG 28626 |||||| ||||| ||||||| |||||| |||||||| || | ||| || |||||| Sbjct 2281 ACCAGGCCAGCAAGTCGCGGCACAGCGCCTGCACGATGTTTTCCGCCAGC-TTGCCGCCG 2223 Query 28627 TGTGTGTACAGGGTAGTCCACTGCCGTGTTAACTGGTTCTCGCCCTGGTACTTAAT 28682 | ||| || | |||||||||||| |||||||||||||||||| || || Sbjct 2222 TAGGTGAACTGCCAGCCCCACTGCCGTGTGGTCTGGTTCTCGCCCTGGTATTTGAT 2167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136720663955544