Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq31 170 6e-38 >seq31 Length=5916 Score = 170 bits (188), Expect = 6e-38 Identities = 346/506 (68%), Gaps = 12/506 (2%) Strand=Plus/Minus Query 22732 GGCGGGCTCTCTGATTGCGTCGCTGTCGTAGTGGTACCGCCGCGACTTGCTGAGCAGGAA 22791 |||||| || ||| ||||||| ||| | | || ||| |||| ||||| |||| ||| Sbjct 5199 GGCGGGTTCCTTGACGGCGTCGCGGTCAAAATAATAACGCGGCGATTTGCTAAGCAAGAA 5140 Query 22792 CAGGTATTCGTGAGCCTTGGTGCAGCGGTCACGCGTCGACTCCGGCATAGGGTTTGGCTT 22851 | || || || || || |||||||| || ||| ||||||||| ||||| ||||| Sbjct 5139 AATATACTCATGGGCTTTCGTGCAGCGATCGCGCACACTCTCCGGCATTGGGTTCGGCTT 5080 Query 22852 GTGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAAGGCCAGGCG 22911 ||||| |||||||||||||| | |||||||||||| | |||| ||||||||||| Sbjct 5079 ATGCCATATGATGTCCTGCCGTAAATACCAGCCGTCCGCACGCAGGGCGAAGGCCAGCAT 5020 Query 22912 CCAGGGCATGCCCATCAAGTCTTTCGGCTTGTATTCTGCATGTGTCGGCAACTTTGATTT 22971 ||| || ||||| |||| |||||| ||| || | | | |||| || || | Sbjct 5019 CCACGGAATGCCGATCAGGTCTTT-ATCTTTCATCC--CCT---CCGGCGCTTTAGACGT 4966 Query 22972 ACGCTGGCTCGCCATCACTTGGCGTTGGCTCAGTGTCGAAACA-CCGACGCCCATGTCGT 23030 || | || | | | || || || |||| | || || || | | Sbjct 4965 CCGGTCGCCGATCTGCTCCATGC-TTCGCCGGGTGT--TACCAGCCTTGGCTGAAACGGA 4909 Query 23031 CAC--GGCCGTGCGCGCCCCAGCTACCGGCGTAGCTGTCGCCCATGTTTACCCAGATCGT 23088 ||| || | || || | | | | ||| ||||||||||| ||||| ||||| | || Sbjct 4908 CACCTTGCGATCCGTCCCTCCGGTGCGGGCATAGCTGTCGCCGATGTTAACCCATAATGT 4849 Query 23089 GCCGTCAGCGCGGAGCACCCGGCGCACTTCGCGGAACACGTCGACCAACCGAGCGATGAA 23148 ||||| |||| ||||| || ||||| |||||||||| |||| | || |||| || Sbjct 4848 CCCGTCGTCGCGCAGCACGCGCCGCACGGCGCGGAACACACGCACCAGCTGATCGATAAA 4789 Query 23149 CTCGGCAGGTGTTTCCTCAAGGCCGATCTGGCCTTCTACGCCATAGTCACGCAGGCCGTA 23208 | | | || || |||| |||||| || || || ||||| ||||||||||| | Sbjct 4788 CGCTTCCGGCGTAGCCTCGTTGCCGATTTGACCGTCACACCCATAATCACGCAGGCCAAA 4729 Query 23209 GTAGGGCGGGCTGGTCACGCACGTAT 23234 || ||||||||||| ||||| |||| Sbjct 4728 ATAAGGCGGGCTGGTGACGCAGGTAT 4703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163363369757488