Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq652 127 4e-24 seq1419 122 2e-22 seq1526 116 7e-21 seq1101 100 6e-16 seq988 91.5 3e-13 >seq652 Length=32697 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | |||| ||| || || ||||| || || || || Sbjct 7118 TACCACCACGAAGACGGAGAACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCGT 7059 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || |||||||| || |||| || |||||||| | Sbjct 7058 TGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGG 6999 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| || || || || || |||| ||| ||| | Sbjct 6998 GAATGCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCGATCGAATCGGACCCTTCGA 6939 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 6938 CTTCCAAAGTAATCGTCTTTCCAGTAAGGGTCTTCACAAAGATCTGCATT 6889 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || ||||| ||||| || || || ||| ||| | | || || || || | |||||| Sbjct 11285 GTCGATTCCTTCTGGATGTTGTAGTCATTGAGAGTCCGGCCATCCTCGAGCTACTTTCCA 11226 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| || | || || || ||||| || || | || || || |||| || || Sbjct 11225 GCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTTTTTGTCCTGGGTCTTGGCCTTG 11166 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || ||||||| ||| | |||||| || | || || ||||| || || | ||| Sbjct 11165 ACGTTCTCAATCGAGTCAGCATTTTCTACCTCAAGGGTGATGGTCTTTCCCGTGAGGGTC 11106 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| |||||||| Sbjct 11105 TTCACAAAGATCTGCAT 11089 >seq1419 Length=601844 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||| || || || ||||| || || || || || Sbjct 538430 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCTG 538371 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| ||||| || ||||| || ||||| ||||| || | || || || ||||| Sbjct 538370 AGGGTTCTTCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGA 538311 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || || || || || ||| || || Sbjct 538310 ATTCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACC 538251 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || |||||||| ||||||| ||||| || || |||||||| Sbjct 538250 TCCAGGGTAATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCAT 538204 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| || || || || ||||| || || || || || | | || Sbjct 539150 ACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCC 539091 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||| ||||| || | || ||||| ||||| ||||||||||| Sbjct 539090 GTCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTT 539031 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || ||||| || ||| || || |||| || || Sbjct 539030 GTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGACCTCCAGGGTGAT 538971 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || |||| ||||| || || |||||||| Sbjct 538970 CGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 538935 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||| || || || || |||||||| || || || Sbjct 538658 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCTG 538599 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| | || || || |||||||| | || || || ||||| || Sbjct 538598 AGAGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGA 538539 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||| ||||| || || || || || || || ||| || || Sbjct 538538 ATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACC 538479 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| |||||||| ||||||| ||||| || || |||||||| Sbjct 538478 TCAAGAGTGATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCAT 538432 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||| || || || ||||| || || || || ||| Sbjct 538202 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCACTC 538143 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || || || || || |||||||| | || || || ||||| || Sbjct 538142 AAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGA 538083 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||| ||||| || || || || || || || || || || Sbjct 538082 ATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAACC 538023 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || |||||||| || |||| |||||| || || || |||||| Sbjct 538022 TCCAAGGTAATCGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCATT 537975 >seq1526 Length=386723 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || ||||| ||||| ||||| || || || || Sbjct 246311 CCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 246370 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| ||||| || ||||| ||||| || | || || |||||||| Sbjct 246371 AGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGG 246430 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || || || || || || | || ||| Sbjct 246431 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACT 246490 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || |||||||| || |||| ||||| || || || ||||| Sbjct 246491 TCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 246537 Score = 113 bits (124), Expect = 9e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || || ||||| ||||| || || || || ||| | || || Sbjct 246094 ACGGAGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCC 246153 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||| ||||| || | || || || ||||| ||||||||||| Sbjct 246154 GTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTT 246213 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || ||||| || || || ||||| | || || Sbjct 246214 GTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGAT 246273 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || |||| ||||| || || ||||||||| Sbjct 246274 GGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 246310 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | || || || ||||| ||||||||||| || |||||||| Sbjct 247468 TTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGAATCTTG 247527 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || ||||| || || || ||||||| || |||||||| || ||| Sbjct 247528 GCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTC 247587 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || || ||||| Sbjct 247588 AGAGTTTTCACGAAGATTTGCAT 247610 >seq1101 Length=331277 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | || || |||||||| |||||||||||||| || ||||| Sbjct 90959 TTACCGGCAAAGATCAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTATCCTGGATCTTG 90900 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| || || | || || || | || || |||||||| ||| Sbjct 90899 GCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCGGTC 90840 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || |||||||| Sbjct 90839 AAAGTCTTGACGAAAATCTGCAT 90817 >seq988 Length=203328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || | ||| || || ||||| ||||||||||| ||||||||||| Sbjct 72309 TTACCGGCGAAGATGAGACGTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGAATCTTG 72368 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || || || | ||| || || | || ||||| || || || Sbjct 72369 GCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACCTCGAGGGTGATCGTTTTACCCGTG 72428 Query 82788 AACGTCTTTACAAATATCTGCATTA 82812 | || || || || |||||||||| Sbjct 72429 AGGGTTTTGACGAAAATCTGCATTA 72453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981807550569518